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. 2016 Jul 28;198(16):2263–2274. doi: 10.1128/JB.00322-16

TABLE 3.

Data collection and refinement statisticsa

Parameter Value(s) for:
SeMet-FimV Native FimV
Data collection statistics
    Beamline NSLS X29 NSLS X29
    Wavelength (Å) 0.9791 1.075
    Space group P41212 P212121
    Unit cell dimensions
        a, b, c (Å) 42.33, 42.33, 139.48 34.0, 58.5, 136.7
        α, β, γ (˚) 90.0, 90.0, 90.0 90.0, 90.0, 90.0
    Molecules per ASU 2 6
    Resolution range (Å) 50.0–2.05 (2.09–2.05) 50.0–2.00 (2.07–2.00)
    Total reflections 122,397 246,901
    Unique reflections 8,648 (412) 18,054 (1,394)
    Redundancy 14.2 (11.1) 13.7 (10.6)
    Completeness (%) 99.9 (99.3) 94.6 (76.2)
    Mean II 33.9 (6.2) 20.8 (2.5)
    Rmerge (%)b 7.2 (47.8) 15.1 (78.1)
Refinement statistics
    Rwork/Rfree (%)c 21.5/24.2 20.8/25.8
    Resolution range (Å) 40.50–2.05 44.45–2.01
    No. of reflectionsd 8,314 17,404
    No. of atoms 984 2,244
        Protein 949 2,159
        Water 35 85
    RMSD
        Bond length (Å) 0.013 0.002
        Bond angle (˚) 1.042 0.541
    Avg B2)e 38.8 39.8
        Protein 38.8 39.7
        Water 40.4 42.2
    Coordinate error (Å)f 0.23 0.25
    Ramachandran statistics (%)g
        Most favored regions 95.97 99.31
        Allowed regions 4.03 0.69
        Disallowed regions 0.00 0.00
    PDB ID 4MAL 4MBQ
a

Values in parentheses correspond to the highest-resolution shell.

b

Rmerge = Σhkl Σi | Ii (hkl) − [I(hkl)] |/Σhkl Σi Ii(hkl).

c

Rwork = Σ | |Fobs| − k|Fcalc| |/|Fobs|, where Fobs and Fcalc are the observed and calculated structure factors, respectively. Rfree is the sum extended over a subset of reflections (9.92 and 10.08% for SeMet-FimV and native FimV, respectively) excluded from all stages of the refinement.

d

Only reflections with Fobs/σ(Fobs) of ≥1.34 were used for SeMet-FimV model refinement. All unique reflections in the resolution range of 44.45 to 2.01 Å were included without further cutoff criteria for refinement of native FimV.

e

As calculated using Phenix Refine (43, 44).

f

Maximum-likelihood-based coordinate error, as determined by PHENIX (62).

g

As calculated using MolProbity (63).