TABLE 3.
Parameter | Value(s) for: |
|
---|---|---|
SeMet-FimV | Native FimV | |
Data collection statistics | ||
Beamline | NSLS X29 | NSLS X29 |
Wavelength (Å) | 0.9791 | 1.075 |
Space group | P41212 | P212121 |
Unit cell dimensions | ||
a, b, c (Å) | 42.33, 42.33, 139.48 | 34.0, 58.5, 136.7 |
α, β, γ (˚) | 90.0, 90.0, 90.0 | 90.0, 90.0, 90.0 |
Molecules per ASU | 2 | 6 |
Resolution range (Å) | 50.0–2.05 (2.09–2.05) | 50.0–2.00 (2.07–2.00) |
Total reflections | 122,397 | 246,901 |
Unique reflections | 8,648 (412) | 18,054 (1,394) |
Redundancy | 14.2 (11.1) | 13.7 (10.6) |
Completeness (%) | 99.9 (99.3) | 94.6 (76.2) |
Mean I/σI | 33.9 (6.2) | 20.8 (2.5) |
Rmerge (%)b | 7.2 (47.8) | 15.1 (78.1) |
Refinement statistics | ||
Rwork/Rfree (%)c | 21.5/24.2 | 20.8/25.8 |
Resolution range (Å) | 40.50–2.05 | 44.45–2.01 |
No. of reflectionsd | 8,314 | 17,404 |
No. of atoms | 984 | 2,244 |
Protein | 949 | 2,159 |
Water | 35 | 85 |
RMSD | ||
Bond length (Å) | 0.013 | 0.002 |
Bond angle (˚) | 1.042 | 0.541 |
Avg B (Å2)e | 38.8 | 39.8 |
Protein | 38.8 | 39.7 |
Water | 40.4 | 42.2 |
Coordinate error (Å)f | 0.23 | 0.25 |
Ramachandran statistics (%)g | ||
Most favored regions | 95.97 | 99.31 |
Allowed regions | 4.03 | 0.69 |
Disallowed regions | 0.00 | 0.00 |
PDB ID | 4MAL | 4MBQ |
Values in parentheses correspond to the highest-resolution shell.
Rmerge = Σhkl Σi | Ii (hkl) − [I(hkl)] |/Σhkl Σi Ii(hkl).
Rwork = Σ | |Fobs| − k|Fcalc| |/|Fobs|, where Fobs and Fcalc are the observed and calculated structure factors, respectively. Rfree is the sum extended over a subset of reflections (9.92 and 10.08% for SeMet-FimV and native FimV, respectively) excluded from all stages of the refinement.
Only reflections with Fobs/σ(Fobs) of ≥1.34 were used for SeMet-FimV model refinement. All unique reflections in the resolution range of 44.45 to 2.01 Å were included without further cutoff criteria for refinement of native FimV.
Maximum-likelihood-based coordinate error, as determined by PHENIX (62).
As calculated using MolProbity (63).