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. 2016 Jul 29;17:526. doi: 10.1186/s12864-016-2880-2

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© The Author(s) 2016

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver(http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 6 — a Mean profile of (repeat-masked) polynucleotide coverage in and around the 1,581,256 NIEBs: AAA (orange), TTT (red), AAAAA (purple), TTTTT (blue), AAAAAAA (light green), TTTTTTT (dark green). Ratios $S_{X \to Y}$ of background corrected inter- and intraspecies context-dependent divergence rates plotted against the position from the closest NIEB border. The pannels correspond to the substitution rates: (b) tTt → tAt and aAa → aTa; (c) sTs → sAs and sAs → sTs, where s =(c,g); (d) aGa → aAa and tCt → tTt; (e) ¬aG¬a →¬aA¬a and ¬tC¬t →¬tT¬t, where ¬a=(c,t,g) and ¬t=(a,c,g). In each panel the first (resp. second) substitution is represented in dark green (resp. light green). In (b, c, d, e) curves were smoothed over 30 bp windows. The vertical blue lines have the same meaning as in Fig. 1 a’–c’