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. Author manuscript; available in PMC: 2017 Jan 4.
Published in final edited form as: Nat Genet. 2016 Jul 4;48(8):965–969. doi: 10.1038/ng.3594

Figure 2. Performance of STITCH on CFW mice compared to external validation.

Figure 2

Validation dataset is the Illumina MegaMUGA array (a) and 10X Illumina sequencing (b). Results are shown for STITCH (K=4, diploid mode), Beagle (default) and findhap (maxlen=10000, minlen=100, steps=3, iters=4) genome-wide for n=2,073 mice featuring 7.07M SNPs before QC and 5.72M after QC. STITCH is run using K=4, diploid method, 40 iterations. Post-QC is SNPs with info>0.4 and HWE p-value > 1×10−6.