Figure S5.

Factors Responsible for Discrimination of Stop from Sense, Related to Figure 6

(A) Sequence logos of regions surrounding C. magnum UAA, UAG and UGA sense codons. For the central sense codon itself the underlying base frequencies are shown, not bit scores as for the surrounding bases.

(B) Sequence logos of regions surrounding C. magnum UAA, UAG and UGA stop codons. For the central stop codon itself the underlying base frequencies are shown.

(C) Graphs like those of Figure 5 for Parduczia sp. Transcript ends begin, and include 0, 1, or 2 nucleotides of the poly(A) tail (position 0) to maintain reading frame. The top two subgraphs showing UAA, UAG and UGA counts are for the same data drawn to different scales.