Table 4.

Comparison of performance in identifying FAD binding sites in the electron transport chain with different feature sets

Feature set	True positive	False positive	True negative	False negative	Sens	Spec	Acc	MCC
BINARY	45	972	2058	18	71.43	67.92	67.99	0.12
BLOSUM62	41	977	2053	22	65.08	67.76	67.7	0.1
PAM250	42	996	2032	21	66.67	67.11	67.1	0.1
PSSM	51	1169	1861	12	80.95	61.42	61.82	0.12
PSSM + F-score	51	1142	1888	12	80.95	62.31	62.69	0.13
PSSM + SAAPs	54	1074	1955	9	85.71	64.54	64.97	0.15