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Calculations vs. experiment for each NN parameter set. (A) Canonical stacked pairs; (B) single-nucleotide dangling ends; (C) stacked pairs including one G–U pair; (D) stacked pairs including at least one iG–iC pair; (E) stacked pairs including one D–U pair. All panels are drawn with the same axis limits and a line of equality (dashed) to aid cross-panel visual comparison.
