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. 2016 Jul 12;113(30):E4348–E4356. doi: 10.1073/pnas.1604514113

Table S1.

Strains and plasmids used in this study

Strain/plasmid Relevant characteristics Source
P. stutzeri strains
 A1501 WT, Chinese Culture Collection: CGMCC 0351 (54)
 ATCC17588 WT, Chinese Culture Collection: CGMCC 1.1803
 A1550 (ΔrpoN) rpoN-Cm deletion mutant, Cmr (24)
 A1565 (ΔntrC) ntrC-Cm deletion mutant, Cmr (32)
 A1506 (ΔnifA) nifA-Km deletion mutant, Kmr (24)
 A1507 (ΔrpoS) rpoS-deletion mutant; the rpoS gene was knocked out by homologous suicide plasmid integration using pK18mobsacB as the vector Lab collection
 A1521 (Δhfq) hfq nonpolar insertion mutant; the hfq gene was inactivated by homologous suicide plasmid integration using pK18mob as the vector, Kmr This study
 A1522 hfq nonpolar insertion mutant containing pLAhfq-A1501, Kmr and Tcr This study
 A1514 A1501 containing pLAnfiS-A1501, Tcr This study
 A1701 nfiS-Spc deletion mutant strain, Spcr This study
 A1706 A1701 containing pLAnfiS-A1501, Spcr and Tcr This study
 A1707 A1701 containing pLAnfiS-del9, Spcr and Tcr This study
 A1708 A1701 containing pLAnfiS-ATCC, Spcr and Tcr This study
 A1709 A1701 containing pLAnfiS-mut5, Spcr and Tcr This study
Plasmids
 pK18mob Mobilizable plasmid containing an Escherichia coli origin of replication, Kmr (58)
 pK18mobsacB Allelic exchange vector, Kmr (58)
 pLAFR3 Mobilizable vector, Tcr (60)
 pRK2013 Helper plasmid for conjugation into P. stutzeri A1501, Kmr (59)
 pKatAAD2 Source of spectinomycin resistance cassette, Spcr Lab collection
 pMD18-T 2.96-kb cloning vector, Ampr Takara
 pK18/delS pK18mobsacB derivative carrying a BamHI/HindIII fragment for homologous recombination, Spcr, Kmr This study
 pLAnfiS-A1501 pLAFR3 derivative carrying the WT nfiS gene under the control of its endogenous promoter, Tcr This study
 pLAnfiS-mut5 pLAFR3 derivative carrying a mutated nfiS gene with a substitution of five nucleotides within the pairing site region, Tcr This study
 pLAnfiS-del9 pLAFR3 derivative carrying a mutated nfiS gene with a complete deletion of the 9-nt sequence downstream of the pairing site, Tcr This study
 pLAnfiS-ATCC pLAFR3 derivative carrying the WT nfiS homolog from P. stutzeri ATCC17588 under the control of its endogenous promoter, Tcr This study
 pLAhfq-A1501 pLAFR3 derivative carrying the WT hfq gene under the control of its endogenous promoter, Tcr This study