Table 3. Viral sequences detected in the Spanish Honeybees dataset.
Comparison of the number of reads classified as viruses by Granberg et al. (Blastn-LCA method) and the number of reads classified as viruses by MetLab with Kraken and vFam methods.
| Granberg et al. | MetLab results | |||
|---|---|---|---|---|
| Taxon | Blastn-LCA | Kraken | vFam | MetLab total |
| Secoviridae | 1968 (TuRSV) | 936 (TuRSV) | 279 | 1215 |
| Dicistriviridae | 1048 (IAPV) | 583 (IAPV) | 0 | 583 |
| 664 (ALPV) | 878 (ALPV) | 0 | 878 | |
| Tymoviridae | 563 (TYMV) | 0 | 206 | 206 |
| Caudovirales (Phages) | 30 | 22 | 0 | 22 |
| Retroviridae | 16 | 68 | 0 | 68 |
| Lake Sinai Virus | 14 | 38 | 0 | 38 |
| Baculoviridae | 0 | 11 | 535 | 546 |
| Phycodnaviridae | 0 | 8 | 193 | 201 |
| Others | 7 | 769 | 613 | 1382 |
| Total viruses reads | 4310 | 3313 | 1826 | 5139 |
TuRSV: Turnip Ringspot Virus, IAPV: Israel Acute Paralysis Virus, ALPV: Aphid Lethal Paralysis Virus, TYMV: Turnip Yellow Mosaic Virus.