Table 1.
Tailed phage MCP matches in Enterobacteriaceae genomes
| Phage cluster1 | Prototype phages | Four most closely related Enterobacteriaceae genera with >50% MCP matches4 |
|---|---|---|
| Lytic 1–7 | T1, T4, Vi01, T5, T7, SP6, KP34 | None |
| Lytic 8 | LIMEzero | Enterobacter-53%, Cronobacter-52%, Escherichia-51% |
| Lytic 9 – 25 | ∅KT, GAP227, N4, 9NA, Chi, ∅Eco32, Felix-O1, SETP3 * K1-dep(1) 2), SO-1, ECO1230-10, Gj1, PY100, ∅92, rV5, SPN3US, RaK2, ∅R1–37, | None |
| Lytic 26 | E1 | Klebsiella-54%, Enterobacter-54%, Escherichia-53%, Salmonella-52% |
| Lytic 27 – 32 | EMCL-117, KF-1, MSW-3, Ea35–70, ∅EaH1, 9g | None |
| Lytic 33 | IME-EC2 | Pectobacterium-73%, Escherichia-72%, Salmonella-72%, Leclercia-71% |
| Lytic 34 – 35 | Ss1, CVT22 | None |
| Temperate 1 | Lambda | Escherichia-100%, Shigella-100%, Salmonella-99%, Enterobacter-90% |
| Temperate 2 & 32 | ∅80 & N15 | Escherichia-100%, Enterobacter-96%, Citrobacter-93%, Klebsiella-92% |
| Temperate 3 | PY542 | Yersinia-80%, Klebsiella-78%, Enterobacter-77%, Cirobacter-76% |
| Temperate 4 | HK97 | Enterobacter-99%, Escherichia-98%, Citrobacter-96%, Pantoea-93% |
| Temperate 4 | mEp2352 | Enterobacter-99%, Escherichia-98%, Cronobacter-98%, Klebsiella-91% |
| Temperate 5 | ES18 | Salmonella-100%, Cronobacter-94%, Escherichia-92%, Enterobacter-92% |
| Temperate 6 | Gifsy-2 | Salmonella-100%, Edwardsiella-73%, Hafnia-73%, Escherichia-70% |
| Temperate 7 | BP-4795 | Escherichia-100%, Shigalla-97%, Salmonella-77%, Enterobacter-78% |
| Temperate 8 | SfV2 | Escherichia-100%, Salmonella-99%, Enterobacter-94%, Citrobacter-91% |
| Temperate 8 | SfI | Shigella-100%, Escherichia-100%, Salmonella-100%, Edwardsiella-97% |
| Temperate 9 | P22 | Salmonella-100%, Tautumella-77%, Serratia-76%, Enterobacter-76% |
| Temperate 9 | Sf62 | Escherichia-99%, Salmonella-99%, Serratia-92%, Shimwellia-89% |
| Temperate 10 | APSE-13 | Hamiltonella-99%, Arsenophonus-91%, Providencia-85%, Sodalis-82% |
| Temperate 11 | 933W | Escherichia-99%, Salmonella-85%, Pectobacterium-75%, Yersinia-75% |
| Temperate 12 | HK639 | Enterobacter-97%, Cronobacter-93%, Escherichia-94%, Leclercia-92% |
| Temperate 13 | ∅ES15 | Cronobacter-100%, Enterobacter-73%, Morganella-72%; Salmonella-71% |
| Temperate 14 | HS23 | Sodalis-100%, Leminorella-85%, Erwinia-84% |
| Temperate 15 | ENT47670 | Cronobacter-98%, Escherichia-78%; Enterobacter-78%, Klebsiella-77% |
| Temperate 16 | ZF40 | Brenneria-97%, Pectobacterium-96%, Kosakonia-84%, Serratia-84% |
| Temperate 17 | ∅Et88 | Enterobacter-76%, Hafnia-75% |
| Temperate 18 | ε15 | Salmonella-100%, Klebsiella-99%, Enteroobacter-99%, Citrobacter-98% |
| Temperate 19 | P1 | Escherichia-100%, Salmonella-100%, Klebsiella-99% |
| Temperate 20 | P2 | Escherichia-100%, Salmonella-100%, Shigella-99%, Klebsiella-99% |
| Temperate 21 | ESSI-2 | Cronobacter-100%, Yokenella-84%, Escherichia-83%, Salmonella-82% |
| Temperate 22 | Mu | Escherichia-100%, Salmonella-99%, Citrobacter-73%, Enterobacter-71% |
| Temperate 23 | SSU5 | Salmonella-100%, Enterobacter-100%, Yersinia-99%, Escherichia-99% |
| Temperate 24 | PEp14 | None |
| Temperate 25 | GF-2 | Edwardsiella-99%, Enterobacter-84%, Dickeya-84%, Escherichia-81% |
| Temperate 26 | SEN34 | Salmonella-99%, Escherichia-97%, Citrobacter-97%, Enterobacter-97%% |
1
See Grose and Casjens (2014) for cluster definitions.
2
N15 and ∅80 MCPs are similar in spite of different overall cluster relationship; phage K1-dep(1), PY54, mEp235, Sf6 and SfV MCPs are exceptionally different from those of the other phages in their clusters.
3
Virions produced but not yet shown to be infective.
4
The few database hits to entries with only “WP_” accession numbers that did not allow access to MCP gene context were ignored. Percent identity values are from BLASTp (Altschul et al., 1997) searches and so cover most of the target proteins but may be slightly higher than direct comparison of whole protein sequences.