Table 2.

Transcriptome assembly and annotation statistics compared with previous P. astreoides transcriptome

Assembly components	P. astreoides + Symbiodinium sp. 2016	P. astreoides alone 2016	P. astreoides alone 2013 [3]	Symbiodinium sp. alone 2016
Genes	717 454	95 294	29 422	145 570
Transcripts	867 255	129 718	30 740	186 177
GC %	44	40	42	48
Contig N10	3876	4642	1574	5230
Contig N20	2568	3321	1207	3701
Contig N30	1871	2487	949	2825
Contig N40	1386	1867	767	2236
Contig N50	1005	1358	661	1804
n under 200	0	0	2164	0
n over 1 k	145 836	27 334	3274	67 354
n over 10 k	319	58	0	260
Median contig length (bp)	389	429	418	659
Average contig length (bp)	685	811	550	1105
Maximum length (bp)	28 297	19 877	8171	28 297
Minimum length (bp)	201	201	100	201
Bases Ns	0	0	924	0
Total assembled bases	594 399 145	105 218 865	16 907 062	205 741 294
N50 (longest transcript per unigene)	763	967	640	1623
Total assembled bases (longest transcript per unigene)	430 507 117	65 529 888	15 807 055	145 440 520
No. of possible ORF	578 372	49 348	18 351	221 299
No. of transcripts with ORF	327 829	33 331	15 183	89 425
No. of all possible complete ORF	223 741	26 802	3666	124 810
No. of transcripts with complete ORF	123 339	17 277	2932	59 126
No. of transcripts with Swiss-Prot blast hit	204 071	25 384	15 492	52 308