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. 2016 Aug 2;11(8):e0160370. doi: 10.1371/journal.pone.0160370

Table 3. DEGs identified by comparing RR and TIG basil varieties.

Transcript ID Length (bp) Description (Blast hit) RR—RPKM TIG—RPKM Fold Change
MEP pathway
comp43024_c0_seq1 2379 1-deoxy-D-xylulose-5-phosphate synthase (DXS) 6.25 31.47 5.03
comp49578_c0_seq12 3470 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR) 5.55 19.50 3.51
Carotenoids
comp48796_c1_seq3 1345 phytoene synthase (PSY) 6.52 44.31 6.80
comp50273_c0_seq2 1927 violaxanthin de-epoxidase (VDE) 20.10 44.72 2.23
Tocopherol
comp48509_c0_seq4 1254 4-hydroxyphenylpyruvate dioxygenase (HDP) 4.31 13.30 3.09
Waxes
comp35858_c1_seq1 827 protein ECERIFERUM 1-like (CER1) 9.49 0.52 -18.23
comp39531_c1_seq1 1761 protein ECERIFERUM 1-like (CER1) 28.35 11.49 -2.47
comp45710_c0_seq1 2116 protein ECERIFERUM 1-like (CER1) 206.70 68.03 -3.04
comp47826_c2_seq1 2001 protein ECERIFERUM 1-like (CER1) 15.28 1.18 -12.92
comp45316_c1_seq9 1011 protein ECERIFERUM 3-like (CER3) 9.17 0.64 -14.37
comp47720_c1_seq2 1357 3-ketoacyl-CoA synthase 6-like (KCS6) 57.90 18.63 -3.11
comp45887_c5_seq2 2127 O-acyltransferase WSD1-like (WSD1) 13.80 3.49 -3.95
Flavonoids
comp39915_c0_seq2 1722 flavonol synthase (FLS) 4.32 18.31 4.24
comp30546_c3_seq1 1434 flavonol synthase (FLS) 66.87 150.05 2.24
comp40361_c0_seq2 1380 flavonol synthase (FLS) 49.18 108.52 2.21