Table 4. Averages and standard deviations of computation time for datasets SRR407548, SRS011098, and ERR315856.
| SRR407548 (sec.) | SRS011098 (sec.) | ERR315856 (sec.) | |
|---|---|---|---|
| GHOSTZ-GPU (1 GPU) | 1038.2 ± 47.4 | 730.8 ± 35.7 | 1025.3 ± 42.8 |
| GHOSTZ-GPU (2 GPUs) | 682.4 ± 56.6 | 500.9 ± 70.7 | 701.6 ± 56.6 |
| GHOSTZ-GPU (3 GPUs) | 551.5 ± 34.4 | 375.2 ± 10.2 | 574.8 ± 17.6 |
| GHOSTZ (+ loading database thread) | 4051.6 ± 110.5 | 2249.8 ± 34.1 | 3533.8 ± 96.0 |
| GHOSTZ (original) | 4231.8 ± 159.7 | 2178.3 ± 11.0 | 3560.2 ± 52.1 |
| RAPSearch | 19781.2 ± 2349.6 | 9075.8 ± 101.4 | 12379.2 ± 192.9 |
| RAPSearch (fast) | 996.4 ± 13.2 | 654.8 ± 5.9 | 993.1 ± 31.6 |
| DIAMOND (fast) | 479.3 ± 55.2 | 275.6 ± 74.8 | 279.0 ± 6.7 |
| DIAMOND (sensitive) | 2071.7 ± 4.7 | 713.6 ± 1.9 | 931.5 ± 18.0 |
We assessed each tool with 12 CPU threads.