Table 2.
Putative secondary metabolism gene clusters and their expression in V. dahlia.
| Backbone gene_id | Annotated_gene_function | Cluster | SMURF prediction | VdMcm1 vs. WT [Log2(fold change)] |
|---|---|---|---|---|
| VDAG_00190.1 | Conidial yellow pigment biosynthesis polyketide synthase | NA | PKS | –3.1161 |
| VDAG_01835.1 | Fatty acid synthase S-acetyltransferase | From VDAG_01835 to VDAG_01842 | PKS | NA |
| VDAG_01856.1 | Phenolpthiocerol synthesis polyketide synthase ppsA | NA | PKS | NA |
| VDAG_02144.1 | L-aminoadipate-semialdehyde dehydrogenase | From VDAG_02132 to VDAG_02147 | NRPS-Like | NA |
| VDAG_03466.1 | Fatty acid synthase S-acetyltransferase | From VDAG_03465 to VDAG_03470 | PKS | –3.2949 |
| VDAG_03964.1 | Surfactin synthetase subunit 3 | From VDAG_03961 to VDAG_03970 | NRPS | 1.706 |
| VDAG_05314.1 | N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase | From VDAG_05314 to VDAG_05325 | NRPS | NA |
| VDAG_06409.1 | 3-oxoacyl-[acyl-carrier-protein] synthase | From VDAG_06409 to VDAG_06415 | PKS-Like | NA |
| VDAG_07270.1 | Mycocerosic acid synthase | From VDAG_07259 to VDAG_07280 | PKS | NA |
| VDAG_07928.1 | Lovastatin nonaketide synthase | From VDAG_07920 to VDAG_07931 | HYBRID | –3.4231 |
| VDAG_08188.1 | D-alanine-poly(phosphoribitol) ligase subunit 1 | From VDAG_08174 to VDAG_08191 | NRPS-Like | NA |
| VDAG_08448.1 | Lovastatin nonaketide synthase | From VDAG_08443 to VDAG_08448 | PKS | NA |
| VDAG_09534.1 | Aflatoxin biosynthesis polyketide synthase | From VDAG_09526 to VDAG_09535 | PKS | NA |
| VDAG_09624.1 | Peroxisomal-coenzyme A synthetase | From VDAG_09620 to VDAG_09630 | NRPS-Like | –1.9196 |
| VDAG_09654.1 | Hypothetical protein | From VDAG_09647 to VDAG_09663 | NRPS-Like | NA |
| VDAG_09763.1 | Enterobactin synthetase component F | NA | NRPS-Like | NA |
| VDAG_09802.1 | Transferase family protein | From VDAG_09801 to VDAG_09802 | NRPS-Like | –5.841 |
| VDAG_10211.1 | Hypothetical protein | From VDAG_10211 to VDAG_10219 | NRPS-Like | NA |
Bold Gene ids meant that the corresponding cluster contain only one gene. The Log2(fold change) value, the significantly expressed genes were shown. SMURF, a software, was used to predict the secondary metabolism genes and gene clusters in genomic sequence data. NA represented that genes were not differentially expressed in VdMcm1 deletion mutant compared with wild-type strain.