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. 2016 Aug 2;16:585. doi: 10.1186/s12885-016-2589-2

Table 1.

KRAS codon 12/13 status by HRM and pyrosequencing in 61 CRC samples

HRM Pyrosequencing
Run 1 Run 2
Sample cDNA [ng/μl] Run 1 Run 2 Result % mut. Alleles Result % mut. Alleles Final result
1 11 failed WT a WT WT
2 31 WT a WT WT
3 10 WT a G12C 13.4 mut
4 93 WT a WT WT
5 26 WT a WT WT
6 27 WT a WT WT
7 10 WT a WT WT
8 43 mut G13D 73.9 mut
9 85 failed WT WT WT
10 N/A mut G13D 44.3 mut
11 N/A failed G12V 2.6 WT b
12 N/A WT WT WT
13 N/A mut G12V 41.9 mut
14 126 mut failed G12D 65.7 mut
15 133 mut G12D 74.1 mut
16 97 mut G13D 52.8 mut
17 47 failed WT WT WT
18 14 failed WT WT WT
19 44 WT a WT WT
20 20 failed WT a WT WT
21 N/A failed WT WT
22 138 mut G12V 12.9 mut
23 325 mut G12D 56.1 mut
24 140 WT a WT WT
25 7 mut G12C 61.2 mut
26 4 WT a WT WT
27 27 WT a WT WT
28 13 WT a WT WT
29 207 mut G12D 54.5 mut
30 10 failed WT G12V 1.5 WT b
31 54 WT a WT WT
32 120 mut G12V 29.2 mut
33 33 failed mut G12C 33.5 mut
34 N/A mut G12C 71.4 mut
35 N/A WT WT WT
36 N/A failed WT WT
37 67 WT a WT WT
38 137 mut G12C 76.7 mut
39 63 mut G12A 56 mut
40 13 WT a WT WT
41 113 WT a WT WT
42 82 mut G12C 75.4 mut
43 39 WT WT WT
44 7 WT a G12S 2 WT b
45 23 WT a WT WT
46 24 faileda G13D 3.5 WT b
47 9 WT a WT WT
48 34 WT a G12S 2 WT b
49 25 WT a WT WT
50 17 WT WT WT
51 5 WT a WT WT
52 29 WT a WT WT
53 31 mut G12D 71.3 mut
54 68 WT WT WT
55 93 mut G12D 74.2 mut
56 221 WT WT WT
57 83 WT WT WT
58 N/A WT a G12V 1.2 WT b
59 35 mut G12D 83.3 mut
60 N/A WT WT WT
61 37 WT a WT WT

aSkewed HRM curve

bLOD/threshold for potential low level mutation (cf. Therascreen KRAS Pyro Kit handbook version 1, July 2011): G12D 2.2 %/5.2 %, G12V 1.0 %/4.0 %, G12C 2.1 %/5.1 %, G12S 1.9 %/4.9 %, G13D 1.9 %/4.9 %