Table 3.
Locations of genes with GGDEF/GGEEF domains in the P. priestleyi BC1401 draft genome and similarity of the gene product to WspR based upon modelling of protein structure in Phyre2 [45]
| BC1401 gene | Gene Product Name | Length (aa) | Confidence | %ID | Alignment length |
|---|---|---|---|---|---|
| Ga0079976_102110 | Response regulator receiver modulated diguanylate cyclasea | 331 | 100 % | 38 % | 93 % |
| Ga0079976_106215 | Response regulator receiver modulated diguanylate cyclasea | 312 | 100 % | 39 % | 97 % |
| Ga0079976_102431 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase | 595 | 100 % | 27 % | 50 % |
| Ga0079976_101496 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase | 613 | 100 % | 27 % | 51 % |
| Ga0079976_10199 | PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein | 725 | 100 % | 29 % | 23 % |
| Ga0079976_10297 | Diguanylate cyclase (GGDEF) domain-containing protein | 530 | 100 % | 34 % | 21 % |
| Ga0079976_101051 | PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein | 732 | 100 % | 34 % | 22 % |
Putative wspR homologues are marked with a