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. 2016 Aug 2;9:25. doi: 10.1186/s13040-016-0105-5

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© The Author(s) 2016

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License(http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 6 — Gene expression combine with KEGG. A 3D KEGG network visualization comparing the E. coli gene expression values obtained under a treatment condition and a control condition. In addition to coloring and resizing the genes (i.e., node) of the network based on expression changes related to the control, pathway links are also highlighted in green or red depending on up or down expressed genes they connect in a pathway. The highlighted links allow a whole pathway to be easily discerned as up or down regulated