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. 2016 Aug 3;7:1200. doi: 10.3389/fmicb.2016.01200

Table 2.

Characteristics and PVL-phage typing of 78 PVL-positive S. aureus isolates.

Isolate ID location ST CC SCCmec spa type agr type PFGE attL cluster attR cluster Phage morphology PVL-phage type Isoform of PVL
MRSA (n = 62)
7 Zhejinag ST1 CC1 V t114 I K I I Icosahedral II Φ7247PVL/
ΦST5967PVL		 H2
LS2183 Zhejinag ST59 CC59 NT t437 I B1 I I Icosahedral II NT H1
161 Zhejinag ST188 CC1 NT t189 I M NS NS Icosahedral II NT H2
SH12 Shanghai ST88 CC88 NT t12147 III A1 IV III Icosahedral I ΦPVL H2
244 Zhejinag ST88 CC88 NT t7637 III C7 IV III Elongated ΦTCH60 H2
104 Zhejinag ST88 CC88 NT t5269 III N IV III Elongated ΦTCH60* R2
148 Zhejinag ST9 CC9 IVb t309 I O VI II Icosahedral I ΦPVL H2
203 Zhejinag ST1 CC1 IVa t127 III H3 I NS Icosahedral I Φ108PVL* H1
SH9 Shanghai ST59 CC59 IVa t441 I I1 I I Icosahedral I ΦPVL H1
209 Zhejinag ST59 CC59 IVa t437 I E3 II I Elongated ΦSa2958 H1
LS373 Zhejinag ST59 CC59 IVa t1751 I B3 I I Icosahedral II NT H2
60 Zhejinag ST59 CC59 IVa t437 I D3 NS I Icosahedral II NT H2
34 Zhejinag ST59 CC59 IVa t437 I J I I Icosahedral II NT H2
65 Zhejinag ST59 CC59 IVa t437 I D1 I I Icosahedral II NT H2
79 Zhejinag ST59 CC59 IVa t437 I F2 I I Icosahedral II ΦSa119 H2
186 Zhejinag ST59 CC59 IVa t437 I I1 I I Icosahedral II ΦSa119 H2
238 Zhejinag ST59 CC59 IVa t437 I C3 II I Icosahedral II ΦSa119* H2
212 Zhejinag ST59 CC59 IVa t437 I E1 II I Elongated ΦSa2958 H2
226 Zhejinag ST59 CC59 IVa t437 I C3 II I Elongated ΦSa2958 H2
246 Zhejinag ST338 CC59 IVa t437 I C5 II III Elongated ΦTCH60 H2
202 Zhejinag ST88 CC88 IVa t7637 III H1 IV III Elongated ΦTCH60 H2
213 Zhejinag ST59 CC59 IVa t1451 I H1 NS NS Icosahedral II NT H2
LS1939 Zhejinag ST59 CC59 Iva t437 I B3 I I Icosahedral II NT H2
SH6 Shanghai ST59 CC59 IVa t441 I A3 I I Icosahedral I ΦPVL H2
40 Zhejinag ST59 CC59 IVa t437 I J II I Icosahedral II ΦSa119 R1
218 Zhejinag ST59 CC59 IVa t437 NT E2 II NS Icosahedral II NT R2
206 Zhejinag ST59 CC59 IVa t437 I H2 II I Icosahedral I ΦPVL R2
LS2032 Zhejinag ST59 CC59 III t437 I A2 I I Icosahedral II NT H1
130 Zhejinag ST59 CC59 III t441 I F2 I I Icosahedral II ΦSa119 H1
242 Zhejinag ST338 CC59 III t441 I C2 I I Icosahedral II Φ7247PVL/
ΦST5967PVL		 H1
256 Zhejinag ST59 CC59 III t5983 I D2 I I Icosahedral II Φ7247PVL/
ΦST5967PVL		 H1
211 Zhejinag ST22 CC22 III t5983 I G1 VI II Icosahedral I Φtp310-1 H1
LS1268 Zhejinag ST59 CC59 III t437 I B3 I I Icosahedral II NT H1
233 Zhejinag ST30 CC30 III t1749 III L VII V Icosahedral II NT H2
219 Zhejinag ST338 CC59 III t437 I C1 I I Icosahedral II NT H2
82 Zhejinag ST59 CC59 III t437 I F1 I I Icosahedral II NT H2
253 Zhejinag ST59 CC59 III t437 I D1 I I Icosahedral II NT H2
8 Zhejinag ST59 CC59 III t437 I D1 I NS Icosahedral II NT H2
204 Zhejinag ST59 CC59 III t437 I E3 I I Icosahedral II NT H2
210 Zhejinag ST59 CC59 III t437 I E4 I I Icosahedral II NT H2
214 Zhejinag ST22 CC22 III t5983 I G1 IV II Icosahedral I ΦPVL H2
221 Zhejinag ST338 CC59 III t437 I C1 I I Icosahedral I ΦPVL H2
69 Zhejinag ST217 CC22 III t309 I G3 III II Icosahedral I ΦPVL* H2
195 Zhejinag ST59 CC59 III t437 I P I I Icosahedral II ΦSa119 H2
51 Zhejinag ST59 CC59 III t441 I D2 I I Elongated ΦSa2958 H2
220 Zhejinag ST338 CC59 III t437 I C1 I I Icosahedral II Φ7247PVL/
ΦST5967PVL		 H2
74 Zhejinag ST59 CC59 III t437 I F1 I I Icosahedral II Φ7247PVL/
ΦST5967PVL		 H2
170 Zhejinag ST59 CC59 III t437 I F2 I I Icosahedral II Φ7247PVL/
ΦST5967PVL		 H2
254 Zhejinag ST59 CC59 III t437 I D1 I I Icosahedral II Φ7247PVL/
ΦST5967PVL		 H2
237 Zhejinag ST59 CC59 III t437 I C4 I I Icosahedral II Φ7247PVL/
ΦST5967PVL		 H2
236 Zhejinag ST59 CC59 III t437 I C4 I I Icosahedral II Φ7247PVL/
ΦST5967PVL		 H2
108 Zhejinag ST59 CC59 III t437 I F2 I I Icosahedral II Φ7247PVL/
ΦST5967PVL		 H2
145 Zhejinag ST59 CC59 III t437 I D2 I I Icosahedral II Φ7247PVL/
ΦST5967PVL		 H2
217 Zhejinag ST59 CC59 III t437 I E1 I I Icosahedral II Φ7247PVL/
ΦST5967PVL		 H2
16 Zhejinag ST59 CC59 III t437 I D3 I I Icosahedral II Φ7247PVL/
ΦST5967PVL		 H2
205 Zhejinag ST22 CC22 III t5983 I G1 I II Icosahedral I Φtp310-1 H2
239 Zhejinag ST22 CC22 III t5983 I G2 I II Icosahedral I Φtp310-1 H2
RJ117 Shanghai ST338 CC59 III t437 I A4 I I Icosahedral II NT H2
LS2137 Zhejinag ST59 CC59 III t2755 I A6 I I Icosahedral II NT H2
3 Zhejinag ST59 CC59 III t034 I Q III III Elongated ΦSa2USA H2
222 Zhejinag ST149 CC5 II t437 I C6 I I Elongated ΦSa2USA H2
255 Zhejinag ST149 CC5 II t437 I K II III Icosahedral I Φtp310-1 H2
MSSA (n = 16)
LS126 Zhejinag ST30 CC30 – t318 I B2 I I Icosahedral II NT H1
SH14 Shanghai ST398 CC398 – t034 I A5 III III Elongated NT H1
LS1985 Zhejinag ST22 CC22 – t309 I B1 IV II Icosahedral I ΦPVL H1
LS2074 Zhejinag ST25 CC25 – t227 I B1 NS IV Icosahedral I ΦPVL H1
SH26 Shanghai ST25 CC25 – t078 I A2 NS NS Elongated ΦSa2958 H1
SH135 Shanghai ST1301 CC121 – t12145 IV A1 V VI Icosahedral I NT H1
LS1940 Zhejinag ST30 CC30 – t318 III A7 I VI Icosahedral II NT H1
LS2078 Zhejinag ST172 singleton – t078 I B1 NS VI Icosahedral I ΦPVL H1
LS1004 Zhejinag ST160 CC121 – t15797 IV B3 V VI Icosahedral I NT H2
LS1966 Zhejinag ST88 CC88 – t15796 III B2 IV III Icosahedral I ΦPVL H2
SH13 Shanghai ST88 CC88 – t2310 III A3 IV III Elongated ΦTCH60 H2
SH25 Shanghai ST217 CC22 – t309 I A4 VIII II Elongated ΦSa2958 H2
SH19 Shanghai ST217 CC22 – t309 I A4 VIII II Elongated ΦSa2958 H3
SJ1775 Shanghai ST398 CC398 – t034 I I2 III III Elongated ΦSa2USA R1
SH3 Shanghai ST398 CC398 – t1255 I A3 III NS Elongated ΦSa2USA R1
LS1911 Zhejinag ST398 CC398 – t034 I B3 III III Elongated ΦSa2USA R1
*

Phages-like, positive by icosahedral/elongated head classification assays (PCR-1 to -3) and characterization assays (PCR-7 to -15) but negative for linkage assays (PCR-4 and -6). –, no SCCmec elements was detected (MSSA).

NT, non-typeable.

NS, could not be sequenced.