Table 2.
Isolate ID | location | ST | CC | SCCmec | spa type | agr type | PFGE | attL cluster | attR cluster | Phage morphology | PVL-phage type | Isoform of PVL |
---|---|---|---|---|---|---|---|---|---|---|---|---|
MRSA (n = 62) | ||||||||||||
7 | Zhejinag | ST1 | CC1 | V | t114 | I | K | I | I | Icosahedral II | Φ7247PVL/ ΦST5967PVL |
H2 |
LS2183 | Zhejinag | ST59 | CC59 | NT | t437 | I | B1 | I | I | Icosahedral II | NT | H1 |
161 | Zhejinag | ST188 | CC1 | NT | t189 | I | M | NS | NS | Icosahedral II | NT | H2 |
SH12 | Shanghai | ST88 | CC88 | NT | t12147 | III | A1 | IV | III | Icosahedral I | ΦPVL | H2 |
244 | Zhejinag | ST88 | CC88 | NT | t7637 | III | C7 | IV | III | Elongated | ΦTCH60 | H2 |
104 | Zhejinag | ST88 | CC88 | NT | t5269 | III | N | IV | III | Elongated | ΦTCH60* | R2 |
148 | Zhejinag | ST9 | CC9 | IVb | t309 | I | O | VI | II | Icosahedral I | ΦPVL | H2 |
203 | Zhejinag | ST1 | CC1 | IVa | t127 | III | H3 | I | NS | Icosahedral I | Φ108PVL* | H1 |
SH9 | Shanghai | ST59 | CC59 | IVa | t441 | I | I1 | I | I | Icosahedral I | ΦPVL | H1 |
209 | Zhejinag | ST59 | CC59 | IVa | t437 | I | E3 | II | I | Elongated | ΦSa2958 | H1 |
LS373 | Zhejinag | ST59 | CC59 | IVa | t1751 | I | B3 | I | I | Icosahedral II | NT | H2 |
60 | Zhejinag | ST59 | CC59 | IVa | t437 | I | D3 | NS | I | Icosahedral II | NT | H2 |
34 | Zhejinag | ST59 | CC59 | IVa | t437 | I | J | I | I | Icosahedral II | NT | H2 |
65 | Zhejinag | ST59 | CC59 | IVa | t437 | I | D1 | I | I | Icosahedral II | NT | H2 |
79 | Zhejinag | ST59 | CC59 | IVa | t437 | I | F2 | I | I | Icosahedral II | ΦSa119 | H2 |
186 | Zhejinag | ST59 | CC59 | IVa | t437 | I | I1 | I | I | Icosahedral II | ΦSa119 | H2 |
238 | Zhejinag | ST59 | CC59 | IVa | t437 | I | C3 | II | I | Icosahedral II | ΦSa119* | H2 |
212 | Zhejinag | ST59 | CC59 | IVa | t437 | I | E1 | II | I | Elongated | ΦSa2958 | H2 |
226 | Zhejinag | ST59 | CC59 | IVa | t437 | I | C3 | II | I | Elongated | ΦSa2958 | H2 |
246 | Zhejinag | ST338 | CC59 | IVa | t437 | I | C5 | II | III | Elongated | ΦTCH60 | H2 |
202 | Zhejinag | ST88 | CC88 | IVa | t7637 | III | H1 | IV | III | Elongated | ΦTCH60 | H2 |
213 | Zhejinag | ST59 | CC59 | IVa | t1451 | I | H1 | NS | NS | Icosahedral II | NT | H2 |
LS1939 | Zhejinag | ST59 | CC59 | Iva | t437 | I | B3 | I | I | Icosahedral II | NT | H2 |
SH6 | Shanghai | ST59 | CC59 | IVa | t441 | I | A3 | I | I | Icosahedral I | ΦPVL | H2 |
40 | Zhejinag | ST59 | CC59 | IVa | t437 | I | J | II | I | Icosahedral II | ΦSa119 | R1 |
218 | Zhejinag | ST59 | CC59 | IVa | t437 | NT | E2 | II | NS | Icosahedral II | NT | R2 |
206 | Zhejinag | ST59 | CC59 | IVa | t437 | I | H2 | II | I | Icosahedral I | ΦPVL | R2 |
LS2032 | Zhejinag | ST59 | CC59 | III | t437 | I | A2 | I | I | Icosahedral II | NT | H1 |
130 | Zhejinag | ST59 | CC59 | III | t441 | I | F2 | I | I | Icosahedral II | ΦSa119 | H1 |
242 | Zhejinag | ST338 | CC59 | III | t441 | I | C2 | I | I | Icosahedral II | Φ7247PVL/ ΦST5967PVL |
H1 |
256 | Zhejinag | ST59 | CC59 | III | t5983 | I | D2 | I | I | Icosahedral II | Φ7247PVL/ ΦST5967PVL |
H1 |
211 | Zhejinag | ST22 | CC22 | III | t5983 | I | G1 | VI | II | Icosahedral I | Φtp310-1 | H1 |
LS1268 | Zhejinag | ST59 | CC59 | III | t437 | I | B3 | I | I | Icosahedral II | NT | H1 |
233 | Zhejinag | ST30 | CC30 | III | t1749 | III | L | VII | V | Icosahedral II | NT | H2 |
219 | Zhejinag | ST338 | CC59 | III | t437 | I | C1 | I | I | Icosahedral II | NT | H2 |
82 | Zhejinag | ST59 | CC59 | III | t437 | I | F1 | I | I | Icosahedral II | NT | H2 |
253 | Zhejinag | ST59 | CC59 | III | t437 | I | D1 | I | I | Icosahedral II | NT | H2 |
8 | Zhejinag | ST59 | CC59 | III | t437 | I | D1 | I | NS | Icosahedral II | NT | H2 |
204 | Zhejinag | ST59 | CC59 | III | t437 | I | E3 | I | I | Icosahedral II | NT | H2 |
210 | Zhejinag | ST59 | CC59 | III | t437 | I | E4 | I | I | Icosahedral II | NT | H2 |
214 | Zhejinag | ST22 | CC22 | III | t5983 | I | G1 | IV | II | Icosahedral I | ΦPVL | H2 |
221 | Zhejinag | ST338 | CC59 | III | t437 | I | C1 | I | I | Icosahedral I | ΦPVL | H2 |
69 | Zhejinag | ST217 | CC22 | III | t309 | I | G3 | III | II | Icosahedral I | ΦPVL* | H2 |
195 | Zhejinag | ST59 | CC59 | III | t437 | I | P | I | I | Icosahedral II | ΦSa119 | H2 |
51 | Zhejinag | ST59 | CC59 | III | t441 | I | D2 | I | I | Elongated | ΦSa2958 | H2 |
220 | Zhejinag | ST338 | CC59 | III | t437 | I | C1 | I | I | Icosahedral II | Φ7247PVL/ ΦST5967PVL |
H2 |
74 | Zhejinag | ST59 | CC59 | III | t437 | I | F1 | I | I | Icosahedral II | Φ7247PVL/ ΦST5967PVL |
H2 |
170 | Zhejinag | ST59 | CC59 | III | t437 | I | F2 | I | I | Icosahedral II | Φ7247PVL/ ΦST5967PVL |
H2 |
254 | Zhejinag | ST59 | CC59 | III | t437 | I | D1 | I | I | Icosahedral II | Φ7247PVL/ ΦST5967PVL |
H2 |
237 | Zhejinag | ST59 | CC59 | III | t437 | I | C4 | I | I | Icosahedral II | Φ7247PVL/ ΦST5967PVL |
H2 |
236 | Zhejinag | ST59 | CC59 | III | t437 | I | C4 | I | I | Icosahedral II | Φ7247PVL/ ΦST5967PVL |
H2 |
108 | Zhejinag | ST59 | CC59 | III | t437 | I | F2 | I | I | Icosahedral II | Φ7247PVL/ ΦST5967PVL |
H2 |
145 | Zhejinag | ST59 | CC59 | III | t437 | I | D2 | I | I | Icosahedral II | Φ7247PVL/ ΦST5967PVL |
H2 |
217 | Zhejinag | ST59 | CC59 | III | t437 | I | E1 | I | I | Icosahedral II | Φ7247PVL/ ΦST5967PVL |
H2 |
16 | Zhejinag | ST59 | CC59 | III | t437 | I | D3 | I | I | Icosahedral II | Φ7247PVL/ ΦST5967PVL |
H2 |
205 | Zhejinag | ST22 | CC22 | III | t5983 | I | G1 | I | II | Icosahedral I | Φtp310-1 | H2 |
239 | Zhejinag | ST22 | CC22 | III | t5983 | I | G2 | I | II | Icosahedral I | Φtp310-1 | H2 |
RJ117 | Shanghai | ST338 | CC59 | III | t437 | I | A4 | I | I | Icosahedral II | NT | H2 |
LS2137 | Zhejinag | ST59 | CC59 | III | t2755 | I | A6 | I | I | Icosahedral II | NT | H2 |
3 | Zhejinag | ST59 | CC59 | III | t034 | I | Q | III | III | Elongated | ΦSa2USA | H2 |
222 | Zhejinag | ST149 | CC5 | II | t437 | I | C6 | I | I | Elongated | ΦSa2USA | H2 |
255 | Zhejinag | ST149 | CC5 | II | t437 | I | K | II | III | Icosahedral I | Φtp310-1 | H2 |
MSSA (n = 16) | ||||||||||||
LS126 | Zhejinag | ST30 | CC30 | – | t318 | I | B2 | I | I | Icosahedral II | NT | H1 |
SH14 | Shanghai | ST398 | CC398 | – | t034 | I | A5 | III | III | Elongated | NT | H1 |
LS1985 | Zhejinag | ST22 | CC22 | – | t309 | I | B1 | IV | II | Icosahedral I | ΦPVL | H1 |
LS2074 | Zhejinag | ST25 | CC25 | – | t227 | I | B1 | NS | IV | Icosahedral I | ΦPVL | H1 |
SH26 | Shanghai | ST25 | CC25 | – | t078 | I | A2 | NS | NS | Elongated | ΦSa2958 | H1 |
SH135 | Shanghai | ST1301 | CC121 | – | t12145 | IV | A1 | V | VI | Icosahedral I | NT | H1 |
LS1940 | Zhejinag | ST30 | CC30 | – | t318 | III | A7 | I | VI | Icosahedral II | NT | H1 |
LS2078 | Zhejinag | ST172 | singleton | – | t078 | I | B1 | NS | VI | Icosahedral I | ΦPVL | H1 |
LS1004 | Zhejinag | ST160 | CC121 | – | t15797 | IV | B3 | V | VI | Icosahedral I | NT | H2 |
LS1966 | Zhejinag | ST88 | CC88 | – | t15796 | III | B2 | IV | III | Icosahedral I | ΦPVL | H2 |
SH13 | Shanghai | ST88 | CC88 | – | t2310 | III | A3 | IV | III | Elongated | ΦTCH60 | H2 |
SH25 | Shanghai | ST217 | CC22 | – | t309 | I | A4 | VIII | II | Elongated | ΦSa2958 | H2 |
SH19 | Shanghai | ST217 | CC22 | – | t309 | I | A4 | VIII | II | Elongated | ΦSa2958 | H3 |
SJ1775 | Shanghai | ST398 | CC398 | – | t034 | I | I2 | III | III | Elongated | ΦSa2USA | R1 |
SH3 | Shanghai | ST398 | CC398 | – | t1255 | I | A3 | III | NS | Elongated | ΦSa2USA | R1 |
LS1911 | Zhejinag | ST398 | CC398 | – | t034 | I | B3 | III | III | Elongated | ΦSa2USA | R1 |
Phages-like, positive by icosahedral/elongated head classification assays (PCR-1 to -3) and characterization assays (PCR-7 to -15) but negative for linkage assays (PCR-4 and -6). –, no SCCmec elements was detected (MSSA).
NT, non-typeable.
NS, could not be sequenced.