Table 2. Similarity search using blastn of selected ESTs for RT-qPCR analysis at the banana and plantain genome database.
Clone | BANANA GENOME ('DH PAHANG') | PLANTAIN GENOME ('PKW') | ||||||
---|---|---|---|---|---|---|---|---|
E-value | % Identity | Locus | Description/function | E-value | % Identity | Locus | Description/function | |
1E3 | e-156 | 99% | GSMUA_Achr5P03850_001 | Uncharacterized protein At1g03900 | e-155 | 98% | ITC1587_Bchr5_P11991 | serine threonine-protein kinase cbk1-like |
1C2 | e-135 | 98% | GSMUA_Achr9P23930_001 | UTP—glucose-1-phosphate uridylyltransferase | e-108 | 95% | ITC1587_Bchr9_P27698 | udp-glucose pyrophosphorylase |
1D8 | e-130 | 98% | GSMUA_Achr5P03660_001 | Phosphoribulokinase/Uridine kinase family protein, expressed | e-130 | 98% | ITC1587_Bchr5_P11976 | phosphoribulokinase |
1G5 | 2e-82 | 86% | GSMUA_Achr3G22310_001 | Putative disease resistance protein RGA1 | 2e-54 | 85% | ITC1587_Bchr3_P07503 | disease resistance protein at3g14460-like |