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. 2016 Aug 3;11(8):e0160338. doi: 10.1371/journal.pone.0160338

Table 3. Putative DEGs involved in storage root formation (Part of S2 Table).

Unigene Log2 FC Probability Homologue ID E-value Homolog name
CL13177.Contig1_All 7.676971 0.969675 sp|Q00081|GLGL1_SOLTU 0 Glucose-1-phosphate adenylyltransferase large subunit 1
CL10402.Contig2_All 6.264433 0.953126 sp|P52417|GLGS2_VICFA 0 Glucose-1-phosphate adenylyltransferase small subunit 2
CL14063.Contig6_All 4.805002 0.939578 sp|P53536|PHSL_VICFA 0 Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic
CL12657.Contig1_All 3.97013 0.933003 sp|Q43092|SSG1_PEA 0 Granule-bound starch synthase 1, chloroplastic/amyloplastic
CL10444.Contig2_All 2.351379 0.886854 sp|Q0WVX5|SSY4_ARATH 3E-103 Probable starch synthase 4, chloroplastic/amyloplastic
CL11429.Contig2_All -1.28089 0.815526 sp|Q8LCP6|GUN10_ARATH 0 Endoglucanase 10
CL13908.Contig14_All 4.335879 0.825065 sp|Q9LZS3|GLGB2_ARATH 0 1,4-Alpha-glucan-branching enzyme 2–2, chloroplastic/amyloplastic
CL886.Contig15_All 7.343399 0.928711 sp|P55231|GLGL3_ARATH 4E-89 Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic
CL14396.Contig5_All 4.665488 0.934589 sp|Q94AZ2|STP13_ARATH 0 Sugar transport protein 13
CL1456.Contig8_All 1.190382 0.807632 sp|Q9SEK3|HXK1_SPIOL 0 Hexokinase-1
CL6463.Contig3_All 3.836333 0.928029 sp|Q9LPS1|HXK3_ARATH 0 Hexokinase-3
CL9768.Contig4_All 3.855858 0.917584 sp|Q38997|KIN10_ARATH 1E-133 SNF1-related protein kinase catalytic subunit alpha KIN10
CL9768.Contig3_All 2.961163 0.889714 sp|Q38997|KIN10_ARATH 2E-156 SNF1-related protein kinase catalytic subunit alpha KIN10
Unigene59772_All -6.52946 0.831999 sp|P92958|KIN11_ARATH 5E-66 SNF1-related protein kinase catalytic subunit alpha KIN11
Unigene59262_All -8.0805 0.940236 sp|P92958|KIN11_ARATH 9E-31 SNF1-related protein kinase catalytic subunit alpha KIN11
CL4742.Contig10_All 2.805577 0.854161 sp|Q9SYM4|TPS1_ARATH 0 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1
CL4742.Contig7_All 1.85385 0.805582 sp|Q9SYM4|TPS1_ARATH 0 Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1
Unigene25815_All -1.20994 0.813003 sp|Q9LMI0|TPS7_ARATH 9E-20 Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
CL9903.Contig2_All 1.880861 0.86867 sp|Q9FUD3|BZIP9_ARATH 8E-52 Basic leucine zipper 9
Unigene33406_All -3.26232 0.920375 sp|B9DGI8|BZP63_ARATH 1E-10 Basic leucine zipper 63
Unigene1547_All -3.65527 0.924065 sp|B9DGI8|BZP63_ARATH 4E-12 Basic leucine zipper 63
CL6174.Contig7_All 1.380675 0.831663 sp|Q9LXL5|SUS4_ARATH 0 Sucrose synthase 4
CL6174.Contig5_All -1.8308 0.861009 sp|O24301|SUS2_PEA 0 Sucrose synthase 2
CL11300.Contig1_All 1.980318 0.874639 sp|Q43876|SPSA_VICFA 0 Probable sucrose-phosphate synthase
CL11300.Contig2_All 1.668228 0.852002 sp|Q43876|SPSA_VICFA 0 Probable sucrose-phosphate synthase
CL12981.Contig1_All -10.8547 0.993212 sp|O23547|EXLB1_ARATH 3.00E-89 Expansin-like B1
CL14227.Contig1_All -4.78227 0.932096 sp|Q38865|EXPA6_ARATH 1.00E-130 Expansin-A6
Unigene25102_All 4.717632 0.938405 sp|O80622|EXP15_ARATH 2.00E-116 Expansin-A15
CL3091.Contig7_All 2.983223 0.909582 sp|O80622|EXP15_ARATH 1.00E-70 Expansin-A15
CL3091.Contig8_All 2.833029 0.90457 sp|Q9LDR9|EXP10_ARATH 7.00E-49 Expansin-A10
CL3091.Contig6_All 3.0807 0.916087 sp|Q9C554|EXPA1_ARATH 6.00E-71 Expansin-A1
Unigene41911_All -2.86906 0.893997 sp|Q8LDW9|XTH9_ARATH 3.00E-57 Xyloglucan endotransglucosylase/hydrolase protein 9
Unigene40780_All -3.84624 0.922292 sp|Q38857|XTH22_ARATH 4.00E-85 Xyloglucan endotransglucosylase/hydrolase protein 22
CL13489.Contig1_All -4.17811 0.923414 sp|Q9ZSU4|XTH14_ARATH 9.00E-38 Xyloglucan endotransglucosylase/hydrolase protein 14
CL1947.Contig6_All -1.50402 0.827194 sp|Q38909|XTH28_ARATH 6.00E-134 Probable xyloglucan endotransglucosylase/hydrolase protein 28
CL7466.Contig3_All -2.06881 0.875615 sp|Q9SJL9|XTH32_ARATH 3.00E-123 Probable xyloglucan endotransglucosylase/hydrolase protein 32
Unigene37972_All -1.24476 0.807754 sp|Q9C9Q8|PMTT_ARATH 5.00E-45 Probable pectin methyltransferase QUA2
Unigene21277_All -1.42031 0.821245 sp|Q9LXK7|PME32_ARATH 2.00E-139 Probable pectinesterase/pectinesterase inhibitor 32
CL11485.Contig2_All -1.70682 0.855194 sp|O81301|PME40_ARATH 8.00E-161 Probable pectinesterase/pectinesterase inhibitor 40
CL9924.Contig2_All -1.77975 0.85495 sp|Q43111|PME3_PHAVU 0 Pectinesterase 3
Unigene17922_All -1.8481 0.863072 sp|Q9FK05|PME61_ARATH 8.00E-71 Probable pectinesterase/pectinesterase inhibitor 61
Unigene36964_All -1.91615 0.856509 sp|O04887|PME2_CITSI 0 Pectinesterase 2
CL9508.Contig4_All -3.24505 0.921022 sp|Q1JPL7|PME18_ARATH 7.00E-172 Pectinesterase/pectinesterase inhibitor 18
CL11485.Contig3_All -4.46623 0.926086 sp|O81301|PME40_ARATH 2.00E-106 Probable pectinesterase/pectinesterase inhibitor 40
Unigene66068_All -3.75972 0.903985 sp|Q38890|GUN25_ARATH 8.00E-123 Endoglucanase 25
CL9596.Contig1_All 3.275602 0.922434 sp|Q9FS16|EXTN3_ARATH 1.00E-32 Extensin-3
CL9470.Contig2_All -1.51796 0.821949 sp|Q9T0K5|LRX3_ARATH 0 Leucine-rich repeat extensin-like protein 3
CL13561.Contig2_All -2.72166 0.896394 sp|O65375|LRX1_ARATH 4.00E-32 Leucine-rich repeat extensin-like protein 1
Unigene33730_All -2.89631 0.913111 sp|Q9LUI1|LRX6_ARATH 7.00E-15 Leucine-rich repeat extensin-like protein 6
Unigene16895_All -2.91198 0.898041 sp|Q9LJ64|PLRX1_ARATH 1.00E-111 Pollen-specific leucine-rich repeat extensin-like protein 1
CL13561.Contig1_All -3.59081 0.926325 sp|Q9M1G9|EXTN2_ARATH 2.00E-103 Extensin-2
Unigene1149_All -5.75528 0.948599 sp|Q9SN46|LRX5_ARATH 2.00E-31 Leucine-rich repeat extensin-like protein 5
Unigene26568_All -1.662 0.845571 sp|O81081|LAC2_ARATH 9.00E-23 Laccase-2
Unigene47867_All -9.01966 0.975263 sp|Q9FLB5|LAC12_ARATH 2.00E-64 Laccase-12
CL3996.Contig1_All -3.93481 0.921552 sp|Q9SIY8|LAC5_ARATH 3.00E-145 Laccase-5
Unigene13230_All -2.55428 0.898325 sp|Q9SR40|LAC7_ARATH 2.00E-104 Laccase-7
Unigene58553_All -2.56409 0.895477 sp|Q9ZRF1|MTDH_FRAAN 1.00E-96 Probable mannitol dehydrogenase
Unigene37208_All -2.15881 0.872666 sp|O82515|MTDH_MEDSA 0 Probable mannitol dehydrogenase