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. 2016 Aug 3;17:539. doi: 10.1186/s12864-016-2840-x

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© The Author(s). 2016

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Similarity-based clustering (a) and PCA plots (b) for RNA-seq samples from three time points. Hierarchical clustering is based on Euclidean distance. Time points are taken at the beginning (20 h), middle (24 h) and end (30 h) of the exponential growth phase. Designations used: G – glucose, X – xylose, R- ribose. Different replicates for each carbon source are numbered (e.g. G1, G2, G3 etc.)