Table 5.

Genes containing Rex TFBS-like motif^a in the upstream regions and upregulated on glucose

Gene locus_tag	Gene function/name	Motif start coordinateb	Motif sequence	Log2FCc
				20 h		24 h		30 h
				G/R	G/X	G/R	G/X	G/R	G/X
LACOL_0123	Glycerol dehydrogenase gldA	−38	TCGTTAACTATTTCACAA	1.5	2.7	1.4	2.0	0.7	2.1
LACOL_0137	CoA-substrate-specific enzyme activase	−186	TTGTTCATTGAAACACAA	0.2	0.9	0.7	1.7	0.7	1.3
LACOL_0222d	1,3-propanediol dehydrogenase dhaT	−64	TTGTGAAATGCGTTACAA	3.8	2.1	2.5	1.4	2.3	1.3
LACOL_0230	Phosphogluconate dehydrogenase gnd	−103	TTGTGAATTTTTTAACTT	0.9	1.4	0.4	0.9	0.5	0.9
		−283	TTGAAAAACAATTCACTA
LACOL_0239e	RpiR family transcriptional regulator	−56	ATGCAAATGTTTTCACAA	2.6	2.2	1.0	1.2	0.8	1.4
LACOL_0253d	R-specific alcohol dehydrogenase radh	−192	TTGTAAACTAGTTAACCT	2.9	2.4	2.9	2.1	2.3	2.1
		−67	TTGTGCTATAGTTCACAT
LACOL_0255d	Aldehyde-alcohol dehydrogenase adhE	−48	TTGTGAATTAAGTAACAA	5.7	6.4	4.9	5.8	3.5	4.3
		−203	TTGTACACTAAATCACAA
LACOL_0628	Peptidoglycan-binding protein	−171	ATGTGCACTTTTTAACAA	0.1	0.4	1.6	1.1	2.2	3.1
LACOL_0760d	Alcohol dehydrogenase adhA	−56	TTGTTAAGTATTTAACTT	5.4	4.1	5.0	4.4	3.8	4.2
		−105	TTGTTAATAATTTCACTT
LACOL_1011d	Diacetyl reductase butA2	−34	TTGTGAATTAAATAACTT	3.6	2.4	4.7	4.0	3.3	3.5
LACOL_1481	Short-chain-enoyl-CoA hydratase	−65	TTGTGAAAATGATATCAT	1.9	2.1	2.0	2.4	1.7	2.1
LACOL_1537d	NADH oxidase nox	−44	TTGTAAAAGTTTTCACAA	1.3	1.6	0.7	2.5	1.6	1.2

^aRex TFBS-like motifs were found by scanning all upstream regions in the genome with the motif profile discovered in the group of genes overexpressed on glucose in comparison with xylose at 20 h (Table 3)

^bMotif start coordinate is given in relation to the predicted translational start site

^cFor the designations, such as G/R, see Table 2. Statistically significant changes are marked in bold

^dGenes, (putatively) involved in NAD(P)H re-oxidation

^eLACOL_0239 shares its upstream region with LACOL_0240 (phosphogluconate dehydrogenase yqeC)