Table 3.
Summary of alignment statistics of sequencing data
| Individual no. | Scaffolds (%) | CDS (%) | Repeats (%) | |||
|---|---|---|---|---|---|---|
| Read1 | Read2 | Read1 | Read2 | Read1 | Read2 | |
| Protocol A | ||||||
| D. latiflorus-3 | 63.21 | 61.35 | – | – | – | – |
| C. pallens | 15.83 | 13.95 | 3.31 | 3.10 | 0.49 | 0.39 |
| Protocol B | ||||||
| Oryza sativa | 88.22 | 82.50 | 19.39 | 19.64 | 6.85 | 7.70 |
| Zea mays | 90.66 | 84.86 | 2.38 | 2.83 | 10.95 | 8.82 |
| P. edulis | 83.80 | 79.93 | 2.38 | 2.87 | 0.11 | 0.17 |
| A. semialata | 3.37 | 3.71 | 1.08 | 1.11 | 0.00 | 0.22 |
| D. latiflorus-1 | 62.23 | 61.97 | – | – | – | – |
| D. latiflorus-2 | 64.15 | 62.59 | – | – | – | – |
| P. rubicunda | 23.19 | 21.72 | 1.40 | 1.59 | 0.10 | 0.15 |
| P. vivax | 25.56 | 24.66 | 1.39 | 1.64 | 0.11 | 0.16 |
As CDS and repeats region were not available for D. latiflorus survey genome sequences, MiddRAD data of D. latiflorus individuals were only mapped to the assembled scaffolds