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. 2016 Aug 3;95(2):328–338. doi: 10.4269/ajtmh.15-0679

Table 2.

Matrix of nucleotide and amino acidic evolutionary distances among INHRR 17a-10 isolate and other Simbu viruses (within the black frame box)

Genome segment Viruses Pairwise distance (Nucleotide)
Pairwise distance (amino acid)
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
SRNA 1 KP026181_Oropouche_TRVL9760 – 0.000 0.000 0.000 0.000 0.000 0.000 0.069 0.385 0.496 0.498 0.490 0.421 0.506 0.497 0.489 0.494 0.494 0.960 1.670
2 KP052852_Oropouche_BeAn19991 0.015 – 0.000 0.000 0.000 0.000 0.000 0.069 0.385 0.496 0.498 0.490 0.421 0.506 0.497 0.489 0.494 0.494 0.960 1.670
3 MIS-0397 0.063 0.049 – 0.000 0.000 0.000 0.000 0.069 0.385 0.496 0.498 0.490 0.421 0.506 0.497 0.489 0.494 0.494 0.960 1.670
4 KF697144_Iquitos_IQT9924 0.063 0.049 0.000 – 0.000 0.000 0.000 0.069 0.385 0.496 0.498 0.490 0.421 0.506 0.497 0.489 0.494 0.494 0.960 1.670
5 KP691626_Perdoes_BeAn_789726 0.049 0.039 0.037 0.037 – 0.000 0.000 0.069 0.385 0.496 0.498 0.490 0.421 0.506 0.497 0.489 0.494 0.494 0.960 1.670
6 TVP_19255_INHRR 17a-10 0.094 0.090 0.095 0.095 0.088 – 0.000 0.069 0.385 0.496 0.498 0.490 0.421 0.506 0.497 0.489 0.494 0.494 0.960 1.670
7 KF697146_Madre_de_Dios_FMD1303 0.094 0.090 0.095 0.095 0.088 0.000 – 0.069 0.385 0.496 0.498 0.490 0.421 0.506 0.497 0.489 0.494 0.494 0.960 1.670
8 JQ675601_Jatobal_strain_BeAN_423380 0.202 0.197 0.212 0.212 0.212 0.198 0.198 – 0.408 0.501 0.504 0.497 0.422 0.516 0.494 0.486 0.490 0.490 1.014 1.616
9 HE795089_Aino 0.561 0.541 0.544 0.544 0.563 0.524 0.524 0.535 – 0.592 0.596 0.588 0.616 0.648 0.694 0.700 0.700 0.700 1.031 1.860
10 HE800143_Shuni 0.542 0.542 0.536 0.536 0.569 0.496 0.496 0.526 0.066 – 0.004 0.009 0.203 0.219 0.251 0.250 0.255 0.255 0.918 1.602
11 HE795095_Peaton 0.561 0.560 0.586 0.586 0.601 0.555 0.555 0.526 0.102 0.095 – 0.004 0.209 0.225 0.245 0.244 0.249 0.249 0.913 1.605
12 HE795092_Douglas 0.499 0.481 0.507 0.507 0.520 0.486 0.486 0.463 0.299 0.298 0.311 – 0.203 0.219 0.239 0.238 0.244 0.244 0.904 1.624
13 HE795104_Sathuperi 0.556 0.551 0.548 0.548 0.573 0.526 0.526 0.486 0.302 0.314 0.314 0.081 – 0.225 0.233 0.239 0.238 0.238 1.040 1.716
14 HE795107_Shamonda 0.517 0.511 0.524 0.524 0.528 0.502 0.502 0.478 0.336 0.316 0.316 0.080 0.081 – 0.248 0.252 0.257 0.257 0.963 1.786
15 JX853181_Schmallenberg 0.507 0.502 0.514 0.514 0.518 0.502 0.502 0.469 0.330 0.316 0.322 0.090 0.079 0.024 – 0.004 0.009 0.009 0.996 1.702
16 NC_018477_Simbu 0.513 0.522 0.510 0.510 0.518 0.507 0.507 0.401 0.306 0.315 0.322 0.259 0.285 0.297 0.297 – 0.004 0.004 0.994 1.698
17 NC_009896_Akabane 0.528 0.509 0.488 0.488 0.514 0.509 0.509 0.491 0.326 0.337 0.338 0.301 0.293 0.320 0.324 0.296 – 0.000 0.999 1.696
18 JX983192_Oya 0.447 0.451 0.477 0.477 0.470 0.473 0.473 0.457 0.602 0.545 0.568 0.632 0.688 0.671 0.689 0.563 0.602 – 0.999 1.696
19 HM627177_Leanyer 0.939 0.938 0.978 0.978 0.918 0.949 0.949 0.875 0.878 0.819 0.819 0.837 0.836 0.851 0.822 0.905 0.904 1.054 – 1.632
20 NC_001927_Bunyamwera 1.576 1.524 1.555 1.555 1.631 1.668 1.668 1.620 1.410 1.538 1.611 1.627 1.590 1.790 1.788 1.577 1.754 1.778 1.580 –
Pairwise distance (Nucleotide)
Pairwise distance (amino acid)
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
MRNA 1 KP026181_Oropouche_TRVL9760 – 0.010 0.658 0.658 1.177 0.666 0.666 1.183 2.049 2.077 2.344 2.193 2.150 2.352 2.174 1.896 2.541 1.036 2.060 2.519
2 KP052852_Oropouche_BeAn19991 0.022 – 0.657 0.657 1.180 0.668 0.668 1.180 2.053 2.090 2.347 2.204 2.161 2.362 2.185 1.902 2.540 1.041 2.064 2.505
3 MIS-0397 0.764 0.763 – 0.000 1.142 0.171 0.171 1.129 1.994 1.983 2.337 2.196 2.149 2.377 2.177 1.944 2.415 1.033 2.102 2.372
4 KF697144_Iquitos_IQT9924 0.764 0.763 0.000 – 1.142 0.171 0.171 1.129 1.994 1.983 0.764 0.763 0.000 – 1.142 0.171 0.171 1.129 1.994 1.983
5 KP691626_Perdoes_BeAn_789726 1.077 1.075 1.120 1.120 – 1.188 1.188 0.304 2.148 2.103 2.279 2.189 2.178 2.334 2.160 1.958 2.389 1.065 2.073 2.480
6 TVP_19255_INHRR 17a-10 0.791 0.791 0.336 0.336 1.059 – 0.000 1.165 1.974 1.996 2.385 2.190 2.145 2.398 2.160 1.938 2.412 1.033 2.152 2.367
7 KF697146_Madre_de_Dios_FMD1303 0.791 0.791 0.336 0.336 1.059 0.003 – 1.165 1.974 1.996 2.385 2.190 2.145 2.398 2.160 1.938 2.412 1.033 2.152 2.367
8 JQ675601_Jatobal_strain_BeAN_423380 1.047 1.055 1.100 1.100 0.474 1.056 1.056 – 2.077 2.007 2.346 2.208 2.191 2.439 2.152 1.934 2.398 1.084 2.054 2.396
9 HE795089_Aino 1.685 1.644 1.659 1.659 1.731 1.646 1.646 1.459 – 0.315 2.062 0.823 0.822 2.110 0.830 1.038 2.090 2.161 2.559 2.750
10 HE800143_Shuni 1.607 1.628 1.494 1.494 1.572 1.651 1.651 1.415 0.477 – 2.151 0.854 0.846 2.077 0.847 1.062 2.014 2.178 2.551 2.672
11 HE795095_Peaton 1.727 1.737 1.803 1.803 1.597 1.794 1.794 1.684 1.767 1.675 – 2.002 2.019 1.275 2.048 2.030 1.122 2.328 2.702 2.912
12 HE795092_Douglas 1.817 1.814 1.729 1.729 1.710 1.794 1.794 1.701 0.859 0.854 1.611 – 0.086 2.049 0.122 1.068 2.053 2.128 2.578 2.757
13 HE795104_Sathuperi 1.760 1.756 1.758 1.758 1.723 1.741 1.741 1.659 0.879 0.879 1.681 0.187 – 2.040 0.103 1.066 2.083 2.083 2.533 2.716
14 HE795107_Shamonda 1.790 1.786 1.885 1.885 2.007 1.963 1.963 1.818 1.838 1.702 1.220 1.668 1.675 – 2.050 1.996 1.211 2.469 2.690 2.847
15 JX853181_Schmallenberg 1.704 1.720 1.715 1.715 1.728 1.694 1.694 1.644 0.884 0.886 1.722 0.265 0.257 1.701 – 1.044 2.092 2.079 2.589 2.745
16 NC_018477_Simbu 1.546 1.530 1.715 1.715 1.430 1.606 1.606 1.453 0.962 0.967 1.714 1.049 1.036 1.610 1.051 – 2.062 1.940 2.450 2.630
17 NC_009896_Akabane 1.863 1.853 1.917 1.917 1.908 1.920 1.920 1.826 1.896 1.722 1.148 1.738 1.632 1.220 1.753 1.895 – 2.449 2.643 2.926
18 JX983192_Oya 1.061 1.060 1.000 1.000 1.066 1.047 1.047 0.997 1.704 1.597 1.830 1.663 1.673 1.932 1.641 1.557 1.885 – 1.976 2.440
19 HM627177_Leanyer 1.729 1.735 1.785 1.785 1.639 1.937 1.937 1.630 2.035 1.972 1.948 1.923 1.948 2.205 1.977 1.881 2.137 1.687 – 2.669
20 NC_001927_Bunyamwera 1.848 1.815 1.815 1.815 1.935 1.910 1.910 1.812 2.057 1.847 2.079 2.179 2.012 2.121 2.093 1.808 2.060 1.826 2.052 –
LRNA 1 KP026181_Oropouche_TRVL9760 – 0.0084 0.0151 0.0151 0.0164 0.0544 0.0532 0.1519 0.7766 0.7647 0.7766 0.8072 0.7998 0.8071 0.8052 0.7775 0.7731 0.5276 0.7644 1.1467
2 KP052852_Oropouche_BeAn19991 0.0228 – 0.0156 0.0156 0.0178 0.0535 0.0523 0.1488 0.7737 0.7618 0.7742 0.8000 0.7932 0.8024 0.8005 0.7723 0.7704 0.5241 0.7599 1.1398
3 MIS-0397 0.1158 0.1168 – 0.0000 0.0075 0.0511 0.0489 0.1488 0.7693 0.7586 0.7709 0.8061 0.7933 0.8018 0.8019 0.7704 0.7680 0.5201 0.7549 1.1412
4 KF697144_Iquitos_IQT9924 0.1158 0.1168 0.0000 – 0.0075 0.0511 0.0489 0.1488 0.7693 0.7586 0.7709 0.8061 0.7933 0.8018 0.8019 0.7704 0.7680 0.5201 0.7549 1.1412
5 KP691626_Perdoes_BeAn_789726 0.1212 0.1252 0.0548 0.0548 – 0.0530 0.0518 0.1486 0.7724 0.7629 0.7747 0.8045 0.7949 0.8001 0.7995 0.7704 0.7695 0.5209 0.7583 1.1419
6 TVP_19255_INHRR 17a-10 0.2274 0.2245 0.2327 0.2327 0.2443 – 0.0018 0.1490 0.7887 0.7793 0.7836 0.7994 0.7976 0.8057 0.8028 0.7686 0.7779 0.5308 0.7649 1.1559
7 KF697146_Madre_de_Dios_FMD1303 0.2274 0.2245 0.2327 0.2327 0.2443 0.0000 – 0.1472 0.7837 0.7743 0.7786 0.7943 0.7925 0.8006 0.7978 0.7637 0.7730 0.5271 0.7610 1.1483
8 JQ675601_Jatobal_strain_BeAN_423380 0.3744 0.3650 0.3703 0.3703 0.3816 0.3743 0.3743 – 0.7809 0.7751 0.7619 0.7947 0.7904 0.7962 0.7883 0.7664 0.7960 0.5279 0.7761 1.1493
9 HE795089_Aino 0.8489 0.8407 0.8263 0.8263 0.8399 0.8289 0.8289 0.8197 – 0.0459 0.1232 0.4880 0.4885 0.4864 0.4814 0.4339 0.4942 0.8162 0.9124 1.2299
10 HE800143_Shuni 0.8239 0.8265 0.8402 0.8402 0.8417 0.8459 0.8459 0.8244 0.2030 – 0.1204 0.4881 0.4873 0.4909 0.4851 0.4350 0.4869 0.8063 0.9171 1.2387
11 HE795095_Peaton 0.8374 0.8347 0.8207 0.8207 0.8331 0.8450 0.8450 0.8331 0.3232 0.3243 – 0.4900 0.4909 0.4902 0.4823 0.4366 0.4865 0.8280 0.9451 1.2474
12 HE795092_Douglas 0.8657 0.8552 0.8710 0.8710 0.8819 0.8596 0.8596 0.8780 0.6483 0.6244 0.6433 – 0.0373 0.0558 0.0512 0.4517 0.4453 0.8512 0.9236 1.2442
13 HE795104_Sathuperi 0.8918 0.8801 0.8838 0.8838 0.8914 0.8745 0.8745 0.8761 0.6413 0.6377 0.6317 0.1692 – 0.0420 0.0412 0.4466 0.4337 0.8433 0.9101 1.2280
14 HE795107_Shamonda 0.8914 0.8875 0.8646 0.8646 0.8797 0.8928 0.8928 0.8898 0.6562 0.6491 0.6471 0.2144 0.2086 – 0.0157 0.4541 0.4363 0.8440 0.9179 1.2257
15 JX853181_Schmallenberg 0.8719 0.8635 0.8756 0.8756 0.8778 0.8726 0.8726 0.8746 0.6258 0.6412 0.6098 0.2127 0.2168 0.0824 – 0.4519 0.4359 0.8429 0.9173 1.2174
16 NC_018477_Simbu 0.8691 0.8618 0.8486 0.8486 0.8572 0.8603 0.8603 0.8674 0.5780 0.5948 0.6002 0.5961 0.5971 0.6059 0.5936 – 0.4393 0.7958 0.9018 1.2326
17 NC_009896_Akabane 0.8654 0.8536 0.8658 0.8658 0.8577 0.8511 0.8511 0.8945 0.6309 0.6577 0.6436 0.6157 0.6013 0.6082 0.5970 0.6001 – 0.8092 0.9311 1.1822
18 JX983192_Oya 0.6833 0.6797 0.6823 0.6823 0.6914 0.6631 0.6631 0.6359 0.8666 0.8466 0.9053 0.8699 0.8896 0.8863 0.9045 0.8495 0.8790 – 0.8133 1.2055
19 HM627177_Leanyer 0.8031 0.8070 0.7946 0.7946 0.7914 0.8110 0.8110 0.8217 0.9361 0.9522 0.9711 0.9170 0.8973 0.9223 0.9114 0.9088 0.9266 0.8683 – 1.2306
20 NC_001927_Bunyamwera 1.1130 1.1012 1.1171 1.1171 1.1044 1.1339 1.1339 1.1277 1.1025 1.1396 1.1202 1.1231 1.1627 1.1639 1.1314 1.1626 1.1103 1.1441 1.1174 –

SRNA, MRNA, and LRNA are small, medium, and large segments of RNA, respectively.

Nucleotide and amino acid genetic distances are highlighted in light blue color. Grey boxes represent no genetic distance between the same virus isolate.