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. 2016 Aug 2;99(2):352–365. doi: 10.1016/j.ajhg.2016.06.018

Table 1.

The Ratio of the Observed Type I Error Rate versus the Nominal Value for the Bonferroni Test, the Unconstrained Score Test, and the Constrained Score Tests

Proportional
n Cases/n Controls p Value Level Bonferroni Unconstrained One-Sided Bidirectional Standard Corrected
Independent Exposures

500/500 0.05 0.99 1.01 1.1 1.02 1.17 0.88
0.001 0.97 1.01 1.57 1.07 4.4 1.05
0.0001 0.88 1.14 1.98 1.32 14.24 1.5
2,500/2,500 0.05 0.98 1.00 1.03 1 1.04 0.98
0.001 0.94 1.05 1.25 1.07 1.5 1.04
0.0001 0.98 1.04 1.34 1.10 2.68 1.40
5,000/5,000 0.05 0.98 0.99 1.02 0.99 1.01 0.99
0.001 0.96 1 1.14 0.97 1.25 1
0.0001 0.76 1.02 1.18 1.02 1.56 1

Correlated Exposures

500/500 0.05 0.94 0.99 1.09 0.99 1.10 0.91
0.001 1.03 1.01 1.65 1.1 3.08 1.18
0.0001 1.34 1.06 2.12 1.34 9.62 2.06
2,500/2,500 0.05 0.98 1.01 1.04 1.01 1.03 0.99
0.001 1.04 0.99 1.38 1.06 1.48 1.1
0.0001 0.92 0.80 1.54 0.90 1.92 0.98
5,000/5,000 0.05 0.97 0.99 1.01 0.99 1.01 0.99
0.001 0.99 1.02 1.21 0.94 1.17 0.99
0.0001 1.12 0.94 1.34 1.16 1.38 1.04