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. 2016 Jun 1;15(8):2641–2670. doi: 10.1074/mcp.M115.057794

Table I. List of proteins identified by cluster after perseus analyses taking into account the time course.

Time clustering
Accession number Protein name Gene name
Cluster 1
    O08557 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 Ddah1
    P02650 Apolipoprotein E Apoe
    P06761 78 kDa glucose-regulated protein Hspa5
    P08699 Galectin-3 Lgals3
    P09495 Tropomyosin alpha-4 chain Tpm4
    P10960 Sulfated glycoprotein 1 Psap
    P11598 Protein disulfide-isomerase A3 Pdia3
    P11762 Galectin-1 Lgals1
    P30427 Plectin Plec
    P31000 Vimentin Vim
    P31232 Transgelin Tagln
    G3V913 Heat shock 27kDa protein 1 Hspb1
    P55051 Fatty acid-binding protein, brain Fabp7
    P85972 Vinculin Vcl
    Q5RKI0 WD repeat-containing protein 1 Wdr1
    Q5XFX0 Transgelin-2 Tagln2
    Q63610–2 Tropomyosin alpha-3 chain Tpm3
    Q6JE36 Protein NDRG1 Ndrg1
    Q9WVR7 Protein phosphatase 1F Ppm1f
    B0K010 Protein Txndc17 Txndc17
    C0JPT7 Filamin alpha Flna
    D3ZHA0 Protein Flnc Flnc
    D3ZQP6 Protein Sema7a Sema7a
    G3V852 Protein Tln1 Tln1
    G3V8L3 Lamin A, isoform CRA_b Lmna
    G3V940 Coronin Coro1b
    Q5XI38 Lymphocyte cytosolic protein 1 Lcp1
Cluster 2
    B0BNN3 Carbonic anhydrase 1 Ca1
    P01048 T-kininogen 1 Map1
    P02091 Hemoglobin subunit beta-1 Hbb
    P02680–2 Fibrinogen gamma chain Fgg
    P04639 Apolipoprotein A-I Apoa1
    P06238 Alpha-2-macroglobulin A2m
    P06866 Haptoglobin Hp
    P08932 T-kininogen 2
    P14480 Fibrinogen beta chain Fgb
    P17475 Alpha-1-antiproteinase Serpina1
    P20059 Hemopexin Hpx
    Q63041 Alpha-1-macroglobulin A1m
    Q9QX79 Fetuin-B Fetub
    G3V7K3 Ceruloplasmin Cp
    M0RBF1 Complement C3 C3
    O54854 Kallikrein 6, isoform CRA_a Klk6
    Q5EBC0 Inter alpha-trypsin inhibitor, heavy chain 4 Itih4
    Q5M7T5 Protein Serpinc1 Serpinc1
    Q62669 Protein Hbb-b1 Hbb-b1
    Q68FY4 Group specific component Gc
    Q7TQ70 Ac1873 Fga
Cluster 3
    B0BNM1 NAD(P)H-hydrate epimerase Apoa1bp
    B2RYG6 Ubiquitin thioesterase OTUB1 Otub1
    P05544 Serine protease inhibitor A3L Serpina3l
    P10860 Glutamate dehydrogenase 1, mitochondrial Glud1
    P11030 Acyl-CoA-binding protein Dbi
    P37805 Transgelin-3 Tagln3
    P50398 Rab GDP dissociation inhibitor alpha Gdi1
    P62161 Calmodulin Calm1
    P63086 Mitogen-activated protein kinase 1 Mapk1
    Q4KM74 Vesicle-trafficking protein SEC22b Sec22b
    Q4KMA2 UV excision repair protein RAD23 homolog B Rad23b
    Q62952–2 Dihydropyrimidinase-related protein 3 Dpysl3
    Q6AY84 Secernin-1 Scrn1
    Q7TP98 Interleukin enhancer-binding factor 2 Ilf2
    D4A5X8 Protein Ahcyl1 Ahcyl1
    F1M978 Inositol monophosphatase 1 Impa1
    F1M9V7 Protein Npepps Npepps
    F1MAQ5 Microtubule-associated protein Map2
    G3V8G4 Brevican, isoform CRA_a Bcan
    M0R686 Protein Irgq Irgq
    M0RE01 Uncharacterized protein LOC100911107
Cluster 4
    B0BNN3 Carbonic anhydrase 1 Ca1
    P01048 T-kininogen 1 Map1
    P02091 Hemoglobin subunit beta-1 Hbb
    P02680–2 Fibrinogen gamma chain Fgg
    P04639 Apolipoprotein A-I Apoa1
    P04692–5 Tropomyosin alpha-1 chain Tpm1
    P06238 Alpha-2-macroglobulin A2m
    P06866 Haptoglobin Hp
    P08592–2 Amyloid beta A4 protein App
    P08932 T-kininogen 2
    P09606 Glutamine synthetase Glul
    P11348 Dihydropteridine reductase Qdpr
    P12839 Neurofilament medium polypeptide Nefm
    P14480 Fibrinogen beta chain Fgb
    P16975 SPARC Sparc
    P17475 Alpha-1-antiproteinase Serpina1
    P19527 Neurofilament light polypeptide Nefl
    P20059 Hemopexin Hpx
    P21807 Peripherin Prph
    P34058 Heat shock protein HSP 90-beta Hsp90ab1
    P50503 Hsc70-interacting protein St13
    P62703 40S ribosomal protein S4, X isoform Rps4x
    P82995 Heat shock protein HSP 90-alpha Hsp90aa1
    Q63041 Alpha-1-macroglobulin A1m
    Q66HA8 Heat shock protein 105 kDa Hsph1
    Q9QX79 Fetuin-B Fetub
    Q9QZA2 Programmed cell death 6-interacting protein Pdcd6ip
    F1LM84 Nidogen-1 Nid1
    F1LRZ7 Neurofilament heavy polypeptide Nefh
    G3V7K3 Ceruloplasmin Cp
    G3V7U4 Lamin-B1 Lmnb1
    Q6PDW1 40S ribosomal protein S12 Rps12
    M0RBF1 Complement C3 C3
    O54854 Kallikrein 6, isoform CRA_a Klk6
    Q5EBC0 Inter alpha-trypsin inhibitor, heavy chain 4 Itih4
    Q5M7T5 Protein Serpinc1 Serpinc1
    Q62669 Protein Hbb-b1 Hbb-b1
    Q68FY4 Group specific component Gc
    Q6MGC4 H2-K region expressed gene 2, rat orthologue Pfdn6
    Q7TQ70 Ac1873 Fga
Cluster 5
    B0BNM1 NAD(P)H-hydrate epimerase Apoa1bp
    B2RYG6 Ubiquitin thioesterase OTUB1 Otub1
    O08651 d-3-phosphoglycerate dehydrogenase Phgdh
    O35077 Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic Gpd1
    O35760 Isopentenyl-diphosphate Delta-isomerase 1 Idi1
    O88350 Putative hydrolase RBBP9 Rbbp9
    M0R590 Protein LOC685186 LOC685186
    P04905 Glutathione S-transferase Mu 1 Gstm1
    F1LND7 Farnesyl pyrophosphate synthase Fdps
    P05544 Serine protease inhibitor A3L Serpina3l
    P05708 Hexokinase-1 Hk1
    P08009 Glutathione S-transferase Yb-3 Gstm3
    P10860 Glutamate dehydrogenase 1, mitochondrial Glud1
    P10959 Carboxylesterase 1C Ces1c
    P11030 Acyl-CoA-binding protein Dbi
    P11980 Pyruvate kinase PKM Pkm
    P12346 Serotransferrin Tf
    P12785 Fatty acid synthase Fasn
    P13233 2′,3′-cyclic-nucleotide 3′-phosphodiesterase Cnp
    P13668 Stathmin Stmn1
    G3V9G4 ATP citrate lyase, isoform CRA_b Acly
    P17425 Hydroxymethylglutaryl-CoA synthase, cytoplasmic Hmgcs1
    P24155 Thimet oligopeptidase Thop1
    P24329 Thiosulfate sulfurtransferase Tst
    P28037 Cytosolic 10-formyltetrahydrofolate dehydrogenase Aldh1l1
    P30904 Macrophage migration inhibitory factor Mif
    P32232–2 Cystathionine beta-synthase Cbs
    P37361 Metallothionein-3 Mt3
    P37805 Transgelin-3 Tagln3
    P50398 Rab GDP dissociation inhibitor alpha Gdi1
    P50408 V-type proton ATPase subunit F Atp6v1f
    P51635 Alcohol dehydrogenase [NADP(+)] Akr1a1
    P84079 ADP-ribosylation factor 1 Arf1
    P62161 Calmodulin Calm1
    P62828 GTP-binding nuclear protein Ran Ran
    P63086 Mitogen-activated protein kinase 1 Mapk1
    Q3KRE8 Tubulin beta-2B chain Tubb2b
    Q497B0 Omega-amidase NIT2 Nit2
    Q4KM74 Vesicle-trafficking protein SEC22b Sec22b
    Q4KMA2 UV excision repair protein RAD23 homolog B Rad23b
    Q4V8C3–2 Echinoderm microtubule-associated protein-like 1 Eml1
    Q5BJP9 Phytanoyl-CoA dioxygenase domain-containing protein 1 Phyhd1
    Q5PQN7 Protein LZIC Lzic
    Q5XI22 Acetyl-CoA acetyltransferase, cytosolic Acat2
    Q62952–2 Dihydropyrimidinase-related protein 3 Dpysl3
    Q66HG4 Aldose 1-epimerase Galm
    Q6AY84 Secernin-1 Scrn1
    Q6AYS7 Aminoacylase-1A Acy1a
    Q6P502 T-complex protein 1 subunit gamma Cct3
    Q6P9V9 Tubulin alpha-1B chain Tuba1b
    Q7TP98 Interleukin enhancer-binding factor 2 Ilf2
    Q91XU1 Protein quaking Qki
    Q9JHU0 Dihydropyrimidinase-related protein 5 Dpysl5
    Q9QXU9 ProSAAS Pcsk1n
    Q9Z1B2 Glutathione S-transferase Mu 5 Gstm5
    B2GUZ9 Fam49b protein Fam49b
    B4F7C2 Protein Tubb4a Tubb4a
    B5DFN4 Prefoldin 5 (Predicted), isoform CRA_a Pfdn5
    D3ZFU9 Protein Mylk Mylk
    D4AD67 Protein Ktn1 Ktn1
    D4A5X8 Protein Ahcyl1 Ahcyl1
    D4ACB8 Chaperonin subunit 8 (Theta) (Predicted), isoform CRA_a Cct8
    D4AEH9 Amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (Glycogen debranching enzyme, glycogen storage disease type III) Agl
    F1LM42 Protein Ank2 Ank2
    F1M978 Inositol monophosphatase 1 Impa1
    F1M9V7 Protein Npepps Npepps
    F1MAQ5 Microtubule-associated protein Map2
    F7F7H4 Uncharacterized protein Dock2
    G3V721 WW domain binding protein 2, isoform CRA_b Wbp2
    G3V7C6 RCG45400 Tubb4b
    G3V8G4 Brevican, isoform CRA_a Bcan
    G3V8V3 Phosphorylase Pygm
    G3V9U0 Acyl-CoA synthetase short-chain family member 2 (Predicted) Acss2
    M0R686 Protein Irgq Irgq
    M0RE01 Uncharacterized protein LOC100911107
    Q4KM55 Protein Vta1 Vta1
    Q642E5 Diphosphomevalonate decarboxylase Mvd
Cluster 6
    B0BNN3 Carbonic anhydrase 1 Ca1
    O08557 N(G),N(G)-dimethylarginine dimethylaminohydrolase 1 Ddah1
    P01048 T-kininogen 1 Map1
    P02091 Hemoglobin subunit beta-1 Hbb
    P02650 Apolipoprotein E Apoe
    P02680–2 Fibrinogen gamma chain Fgg
    P04639 Apolipoprotein A-I Apoa1
    P04692–5 Tropomyosin alpha-1 chain Tpm1
    P06238 Alpha-2-macroglobulin A2m
    P06761 78 kDa glucose-regulated protein Hspa5
    P06866 Haptoglobin Hp
    P08592–2 Amyloid beta A4 protein App
    P08699 Galectin-3 Lgals3
    P08932 T-kininogen 2
    P09495 Tropomyosin alpha-4 chain Tpm4
    P09606 Glutamine synthetase Glul
    P10960 Sulfated glycoprotein 1 Psap
    P11348 Dihydropteridine reductase Qdpr
    P11598 Protein disulfide-isomerase A3 Pdia3
    P11762 Galectin-1 Lgals1
    P12839 Neurofilament medium polypeptide Nefm
    P14480 Fibrinogen beta chain Fgb
    P16975 SPARC Sparc
    P17475 Alpha-1-antiproteinase Serpina1
    P19527 Neurofilament light polypeptide Nefl
    P20059 Hemopexin Hpx
    P21807 Peripherin Prph
    P30427 Plectin Plec
    P31000 Vimentin Vim
    P31232 Transgelin Tagln
    P34058 Heat shock protein HSP 90-beta Hsp90ab1
    G3V913 Heat shock 27kDa protein 1 Hspb1
    P50503 Hsc70-interacting protein St13
    P55051 Fatty acid-binding protein, brain Fabp7
    P62703 40S ribosomal protein S4, X isoform Rps4x
    P82995 Heat shock protein HSP 90-alpha Hsp90aa1
    P85972 Vinculin Vcl
    Q5RKI0 WD repeat-containing protein 1 Wdr1
    Q5XFX0 Transgelin-2 Tagln2
    Q63028 Alpha-adducin Add1
    Q63041 Alpha-1-macroglobulin A1m
    Q63610–2 Tropomyosin alpha-3 chain Tpm3
    Q66HA8 Heat shock protein 105 kDa Hsph1
    Q68FQ2 Junctional adhesion molecule C Jam3
    Q6JE36 Protein NDRG1 Ndrg1
    Q9QX79 Fetuin-B Fetub
    Q9QZA2 Programmed cell death 6-interacting protein Pdcd6ip
    Q9WVR7 Protein phosphatase 1F Ppm1f
    B0K010 Protein Txndc17 Txndc17
    C0JPT7 Filamin alpha Flna
    D3ZHA0 Protein Flnc Flnc
    D3ZQP6 Protein Sema7a Sema7a
    F1LM84 Nidogen-1 Nid1
    F1LRZ7 Neurofilament heavy polypeptide Nefh
    G3V7K3 Ceruloplasmin Cp
    G3V7U4 Lamin-B1 Lmnb1
    G3V852 Protein Tln1 Tln1
    G3V8L3 Lamin A, isoform CRA_b Lmna
    G3V940 Coronin Coro1b
    Q6PDW1 40S ribosomal protein S12 Rps12
    M0RBF1 Complement C3 C3
    O54854 Kallikrein 6, isoform CRA_a Klk6
    Q5EBC0 Inter alpha-trypsin inhibitor, heavy chain 4 Itih4
    Q5M7T5 Protein Serpinc1 Serpinc1
    Q5XI38 Lymphocyte cytosolic protein 1 Lcp1
    Q62669 Protein Hbb-b1 Hbb-b1
    Q68FY4 Group specific component Gc
    Q6MGC4 H2-K region expressed gene 2, rat orthologue Pfdn6
    Q7TQ70 Ac1873 Fga
Cluster 7
    P05708 Hexokinase-1 Hk1
    P12346 Serotransferrin Tf
    P30904 Macrophage migration inhibitory factor Mif
    Q6P502 T-complex protein 1 subunit gamma Cct3
    D4ACB8 Chaperonin subunit 8 (Theta) (Predicted), isoform CRA_a Cct8
    D4AEH9 Amylo-1, 6-glucosidase, 4-alpha-glucanotransferase (Glycogen debranching enzyme, glycogen storage disease type III) Agl
    F7F7H4 Uncharacterized protein Dock2
    G3V721 WW domain binding protein 2, isoform CRA_b Wbp2