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. 2016 Jun 8;15(8):2699–2714. doi: 10.1074/mcp.M115.056564

Table I. 32 macrophage-specific RBP candidates in the RAW 264.7 cell interactome.

Gene symbol ENSEMBL ID Gene name Panther (protein class) Protein domains
RNA binding
    Phax ENSMUSG00000008301 Phosphorylated adapter RNA export protein nucleic acid binding Phosphorylated adapter RNA export protein, RNA-binding domain
    Prkrip1/C114 ENSMUSG00000039737 PRKR-interacting protein 1
    Rpl12 ENSMUSG00000038900 60S ribosomal protein L12 nucleic acid binding
RNA related
    Gm10119 ENSMUSG00000062611 40S ribosomal protein S3a nucleic acid binding
    Gm10154 ENSMUSG00000066116 60S ribosomal protein L34 nucleic acid binding
    Hic2 ENSMUSG00000050240 Hypermethylated in cancer 2 protein nucleic acid binding, transcription factor Zinc finger, C2H2-type, BTB/POZ-like
    Lrrfip1 ENSMUSG00000026305 Leucine-rich repeat flightless-interacting protein 1 nucleic acid binding, transcription factor
    Rplp2 ENSMUSG00000025508 60S acidic ribosomal protein P2 nucleic acid binding WD40 repeat
    Rps17 ENSMUSG00000061787 40S ribosomal protein S17 nucleic acid binding
Nucleic acid binding or related
    Eif1 ENSMUSG00000035530 Eukaryotic translation initiation factor 1b
    Hdgf ENSMUSG00000004897 Hepatoma-derived growth factor transcription factor, signaling molecule PWWP domain
    Hmgb3 ENSMUSG00000015217 High mobility group protein B3 nucleic acid binding, transcription factor, signaling molecule HMG box A DNA-binding domain
    Junb ENSMUSG00000052837 Transcription factor jun-B nucleic acid binding, transcription factor Basic-leucine zipper (bZIP) transcription factor
Not related to nucleic acid binding
    1810009A15Rik ENSMUSG00000071653
    A230050P20Rik UPF0515 protein C19orf66 homolog
    Arhgdia ENSMUSG00000025132 Rho GDP-dissociation inhibitor 1 enzyme modulator, signaling molecule
    Arhgdib ENSMUSG00000030220 Rho GDP-dissociation inhibitor 2 enzyme modulator, signaling molecule
    Capg ENSMUSG00000056737 Macrophage-capping protein cytoskeletal protein, calcium-binding protein Gelsolin
    Cdv3 ENSMUSG00000032803 Protein CDV3
    Cfl1 ENSMUSG00000056201 Cofilin-1 cytoskeletal protein Actin-binding, cofilin/tropomyosin type
    Fv4 ENSMUSG00000075231 MLV-related proviral Env polyprotein Viral protein
    Hcls1 ENSMUSG00000022831 Hematopoietic lineage cell-specific protein cytoskeletal protein, transcription factor SH3 domain
    Lcp1 ENSMUSG00000021998 lymphocyte cytosolic protein 1 cytoskeletal protein Calponin-like actin-binding, Calcium-binding EF-hand
    Lmna ENSMUSG00000028063 Prelamin-A/C; Lamin-A/C cytoskeletal protein, structural protein Intermediate filament tail domain
    Ltv1 ENSMUSG00000019814 Protein LTV1 homolog
    Pcnp ENSMUSG00000071533 PEST proteolytic signal-containing nuclear protein
    Ptges3/p23 ENSMUSG00000071072 Prostaglandin E synthase 3 chaperone CS domain
    Ranbp1 ENSMUSG00000005732 Ran-specific GTPase-activating protein enzyme modulator Pleckstrin homology-type
    Set ENSMUSG00000054766 Protein SET enzyme modulator, chaperone
    Tubb4b ENSMUSG00000036752 Tubulin beta-4B chain cytoskeletal protein
    Txlna ENSMUSG00000053841 Alpha-taxilin defense/immunity protein Myosin-like coiled-coil protein
    Vim ENSMUSG00000026728 Vimentin cytoskeletal protein, structural protein Intermediate filament protein