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Quantitation using a feature list in a new release of MaxQuant. Three key steps for setting up a MaxQuant quantitation for cross-linked peptides and other analytes currently not native to the MaxQuant identification workflow in the new user interface of MaxQuant (version 1.5.4.1): A, Loading raw data. B, Selecting identification independent quantitation. C, Uploading peptide library and define chromatography related parameters.
