Table 1.
RCA-derived sequences and BLAST analysis of their partial RT-RNaseH (528 bp) coding regions.
| Plant Accession a | RCA Sequence | Accession | Size (bp) | NCBI Nearest Match | Identity (%) | Species Group e |
|---|---|---|---|---|---|---|
| Adaka (TDr) | DBRTV2-[2RT] d | KX008578 | 7462 | S1un5Dr (KF830000) | 72 | T14 |
| TDa 00/00005 | NGb0005Da1 b | KX008580 | 528 | NG1Da (AM944571) | 96 | K08 |
| NGb0005Da2 b | KX008581 | 528 | S1g6Dr (KF829974) | 92 | K05 | |
| TDa 85/00250 | DBALV-[2ALa] | KX008571 | 7544 | VU249Db (AM072705) | 94 | K08 |
| DBALV-[2ALb] | KX008572 | 7544 | VU249Db (AM072705) | 94 | K08 | |
| TDa 95/00310 | NGb0310Da1 b | KX008582 | 528 | NG1Da (AM944571) | 98 | K08 |
| NGb0310Da2 b | KX008583 | 528 | NG3Da (AM944573) | 97 | K08 | |
| NGb0310Da3 b | KX008584 | 528 | TG2Dr (AM944580) | 90 | T15 | |
| TDc 3841A | NGl3841Dc b | KX008585 | 528 | FJ60bDr (AM072659) | 91 | K05 |
| TDr 04/00219 × TDr 97/00777 | NGb0477Dr b | KX008586 | 528 | BfA103Dc (AM503393) | 99 | K08 |
| TDr 1892 | DBRTV2 d | KX008577 | 7438 | FJ60bDr (AM072659) | 72 | T14 |
| NGb1892Dr1 b | KX008587 | 528 | NG1Da (AM944571) | 88 | K08 | |
| NGb1892Dr2 b | KX008588 | 528 | NG01Dr (AM072673) | 86 | K08 | |
| TDr 1892B | DBRTV1-[2RT] c | KX008575 | 7707 | S2f8Dr (KF829993) | 77 | T13 |
| DBRTV2-[3RT] d | KX008579 | 7438 | FJ60bDr (AM072659) | 72 | T14 | |
| DBALV-[3RT] c | KX008573 | 7609 | NG01Dr (AM072673) | 99 | K08 | |
| TDr 1950B | NGl1950Dr b | KX008589 | 528 | S1g6Dr (KF829974) | 100 | K05 |
| TDr 89/02475 | DBRTV1 | KX008574 | 7702 | S2f8Dr (KF829993) | 76 | T13 |
| NGb2475Dr b | KX008590 | 528 | NG01Dr (AM072673) | 86 | K08 | |
| TDr 89/02475A | DBRTV1-[3RT] d | KX008576 | 7708 | S2f8Dr (KF829993) | 76 | T13 |
| TDr 95/18544 | NGb1844Dr1 b | KX008591 | 528 | S2f8Dr (KF829993) | 76 | T13 |
| NGb1844Dr2 b | KX008592 | 528 | VU249Db (AM072705) | 94 | K08 |
a The host plants are represented by plant accession, TDa = D. alata, TDc = D. cayenensis and TDr = D. rotundata; b Sequences derived from PCR amplifications using Badna-FP/-RP primer pair with RCA fragments as template; c Combination of RCA and PCR clones; d Derived from PCR clones; e According to phylogenetic tree (Figure 2).