Table 3.
ChISGs identified by RNA-seq using Baggerly’s test but not Kal’s test using standard criteria (FC > 3 or FDR < 0.01)
| Feature ID | Baggerley’s weighted proportions FC | Baggerley’s FDR p value correction | Kal’s relaxed FDR < 0.05a |
|---|---|---|---|
| FAM26F | 148 | 0.0000 | Yes |
| THEMIS2 | 118 | 0.0004 | |
| ENSGALG00000026152 | 55 | 0.0000 | |
| ENSGALG00000005148 | 54 | 0.0043 | |
| ENSGALG00000003110 | 52 | 0.0050 | |
| IL4I1 | 26 | 0.0040 | |
| C1orf168 | 24 | 0.0001 | |
| SPIRE2 | 18 | 0.0041 | |
| HRH1 | 17 | 0.0001 | |
| AZIN2 | 14 | 0.0000 | |
| ENSGALG00000029181 | 14 | 0.0000 | |
| ENSGALG00000001629 | 12 | 0.0001 | |
| B3GNT4 | 9 | 0.0000 | |
| GDPD4 | 8 | 0.0000 | |
| ATP6V1G3 | 7 | 0.0002 | |
| DUSP15 | 7 | 0.0002 | |
| IKBKE | 7 | 0.0001 | |
| ANGPTL7 | 6 | 0.0000 | |
| ARHGEF28 | 6 | 0.0004 | |
| KCNJ5 | 6 | 0.0000 | |
| CHRD | 5 | 0.0000 | Yes |
| ENSGALG00000002823 | 5 | 0.0005 | |
| ENSGALG00000004772 | 5 | 0.0000 | |
| ENSGALG00000006325 | 5 | 0.0000 | |
| ENSGALG00000027955 | 5 | 0.0000 | |
| FUT10 | 5 | 0.0000 | |
| TOR4A | 5 | 0.0001 | |
| C1QTNF1 | 4 | 0.0000 | |
| CYBRD1 | 4 | 0.0000 | |
| ENSGALG00000000819 | 4 | 0.0028 | |
| ENSGALG00000020899 | 4 | 0.0000 | |
| ISLR | 4 | 0.0000 | |
| JAM2 | 4 | 0.0000 | |
| KIAA0226 | 4 | 0.0028 | |
| MALL | 4 | 0.0002 | |
| MAOA | 4 | 0.0000 | |
| RBM43 | 4 | 0.0015 |
aChISGs significant by Kal’s Z test under relaxed criteria (FDR < 0.05).