Table 1. Rate of cleavage (kapp) of pSu1 and pATSer variants at 10 mM Mg2+.
Substrate | Cleavage site | kapp (min-1) With 3'-CCA | kapp (min-1) Without 3'-CCA |
---|---|---|---|
pSu1(-1C) | C0 | 0.5±0.01 | 0.25±0.005 |
M-1 | 0.7±0.01 | 0.5±0.01 | |
pSu1(-1A) | C0 | 1.6±0.01 | 2.5±0.1 |
M-1 | 0.04±0.0004 | 0.02±0.001 | |
pSu1(-1G) | C0 | 0.8±0.004 | 2±0.07 |
M-1 | 0.03±0.001 | 0.02±0.0004 | |
pSu1(-1U) | C0 | 1.4±0.08 | 0.4±0.01 |
M-1 | 0.03±0.003 | 0.03±0.003 | |
pATSerCG# | C0 | 0.0002±0.00003 | 0.0012±0.00001 |
M-1 | 0.0008±0.00005 | 0.0022±0.0001 | |
pATSerUG# | C0 | 0.0013±0.00005 | 0.0034±0.0002 |
M-1 | 0.0002±0.000005 | 0.00035±0.00005 | |
pATSerCIno# | C0 | 0.0004±0.000001 | 0.001±0.00005 |
M-1 | 0.0012±0.00001 | 0.0019±0.00002 | |
pATSerCU# | C0 | 0.002±0.00005 | ND |
M-1 | 0.0014±0.00002 | ND | |
pATSerUG## | C0 | 0.0009±0.0001 | NA |
pATSerUGΔ3'AC## | C0 | 0.0006±0.00004 | NA |
pATSerUGΔ3'CAC## | C0 | 0.001±0.0001 | NA |
pATSerUGΔ3'CCAC## | C0 | 0.003±0.0008 | NA |
Each value listed is a mean ± standard deviation determined from three or more independent experiments.
#C and U correspond to residue identity at the -1 position while G, Ino (inosine) and U refer to residue identity at the discriminator position "+73" (numbering same as in tRNA; Fig 1).
##kapp values determined at 25 mM Mg2+ for these substrates. While these experiments were performed prior to our establishing 10 mM Mg2+ as being optimal, the rate and fidelity of cleavage is largely unchanged between 10 to 25 mM Mg2+. Δ3'AC, Δ3'CAC and Δ3'CCAC indicates residues in the 3'CCAC motif that were deleted. ND, not determined; NA, not applicable.