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. 2016 Aug 5;11(8):e0160246. doi: 10.1371/journal.pone.0160246

Table 1. Rate of cleavage (kapp) of pSu1 and pATSer variants at 10 mM Mg2+.

Substrate Cleavage site kapp (min-1) With 3'-CCA kapp (min-1) Without 3'-CCA
pSu1(-1C) C0 0.5±0.01 0.25±0.005
M-1 0.7±0.01 0.5±0.01
pSu1(-1A) C0 1.6±0.01 2.5±0.1
M-1 0.04±0.0004 0.02±0.001
pSu1(-1G) C0 0.8±0.004 2±0.07
M-1 0.03±0.001 0.02±0.0004
pSu1(-1U) C0 1.4±0.08 0.4±0.01
M-1 0.03±0.003 0.03±0.003
pATSerCG# C0 0.0002±0.00003 0.0012±0.00001
M-1 0.0008±0.00005 0.0022±0.0001
pATSerUG# C0 0.0013±0.00005 0.0034±0.0002
M-1 0.0002±0.000005 0.00035±0.00005
pATSerCIno# C0 0.0004±0.000001 0.001±0.00005
M-1 0.0012±0.00001 0.0019±0.00002
pATSerCU# C0 0.002±0.00005 ND
M-1 0.0014±0.00002 ND
pATSerUG## C0 0.0009±0.0001 NA
pATSerUGΔ3'AC## C0 0.0006±0.00004 NA
pATSerUGΔ3'CAC## C0 0.001±0.0001 NA
pATSerUGΔ3'CCAC## C0 0.003±0.0008 NA

Each value listed is a mean ± standard deviation determined from three or more independent experiments.

#C and U correspond to residue identity at the -1 position while G, Ino (inosine) and U refer to residue identity at the discriminator position "+73" (numbering same as in tRNA; Fig 1).

##kapp values determined at 25 mM Mg2+ for these substrates. While these experiments were performed prior to our establishing 10 mM Mg2+ as being optimal, the rate and fidelity of cleavage is largely unchanged between 10 to 25 mM Mg2+. Δ3'AC, Δ3'CAC and Δ3'CCAC indicates residues in the 3'CCAC motif that were deleted. ND, not determined; NA, not applicable.