Table 1. Recovery of known allergen sequences in transcriptomic analysis.
All allergens from the 9 pollen species we sequenced for which there was a >50 amino acid residue protein sequence available from IUIS are listed. The ‘match in transcriptome’ column is set to ‘yes’ if there was a match with >90% sequence identity over >50% of the protein sequence. No sequences of sufficient length were available in IUIS for Sweet vernal grass (Ant o).
| Allergen | Match in transcriptome |
Allergen | Match in transcriptome |
|---|---|---|---|
| Bermuda Grass | Oak | ||
| Cyn d 1 | yes | Que a 1 | no |
| Cyn d 7 | yes | Ash | |
| Cyn d 12 | yes | Fra e 1 | yes |
| Cyn d 15 | yes | Olive | |
| Cyn d 23 | yes | Ole e 1 | yes |
| Cyn d 24 | yes | Ole e 2 | yes |
| Rye grass | Ole e 3 | yes | |
| Lol p 1 | yes | Ole e 6 | yes |
| Lol p 2 | yes | Ole e 8 | yes |
| Lol p 3 | yes | Ole e 9 | yes |
| Lol p 4 | yes | Ole e 10 | yes |
| Lol p 5 | yes | Ole e 11 | yes |
| Lol p 11 | yes | English Plantain | |
| Kentucky blue grass | Pla l 1 | yes | |
| Poa p 1 | yes | Western Ragweed | |
| Poa p 5 | no | Amb p 5 | no |