TABLE 2.
Homology of B. koehlerae sequence compared with the sequences of other Bartonella species known to cause human endocarditis
Gene | Size of PCR- sequenced fragment of B. koehlerae (bp) | Nucleotide positiona | % Sequence similarity of B. koehlerae tob:
|
|||
---|---|---|---|---|---|---|
B. henselae | B. quintana | B. elizabethae | B. vinsonii subsp. berkhoffii | |||
htrA | 334 | 1247-1580 | 92 | 86 | NAc | NA |
gltA | 333 | 806-1138 | 91 | 89 | 86 | 87 |
ribC | 450 | 1166-1615 | 92 | 88 | 81 | 85 |
Nucleotide positions correspond to the B. henselae htrA, gltA, and ribC sequences in GenBank (GenBank accession numbers L20127, L38987, and AJ13298, respectively).
Percent sequence similarity of B. koehlerae htrA, gltA, and ribC sequenced PCR fragments to the corresponding Bartonella sequences in GenBank, calculated by use of the BioEdit Sequence Alignment Editor software.
NA, not available.