TABLE 1.
Patient | Wound surface (swab)a | Wound bed (biopsy)b | DGGE (PCR-cloning/sequencing)c |
---|---|---|---|
12 | Coagulase-negative Staphylococcus sp. and Staphylococcus aureus | Coagulase-negative Staphylococcus sp. | Pseudomonassp. (a) (Pseudomonas putida subgroup) and Salmonellasp. (b) |
19 | Coagulase-negative Staphylococcus sp., Micrococcus sp. and Streptococcus sp. | Coagulase-negative Staphylococcus sp. and Micrococcus sp. | Stenotrophomonas maltophilia, (a) Paenibacillus sp., and Pseudomonassp. (b) (Pseudomonas putida subgroup) |
24 | Eubacteriumsp. | Staphylococcus aureus, coagulase-negativeStaphylococcus sp., and Peptostreptococcussp. | Staphylococcus sp. (a) (Staphylococcus aureus subgroup) and Pseudomonassp. (b) (Pseudomonas putida subgroup) |
26 | Pseudomonassp. and gram-negative nonfermenter | Staphylococcus aureus, coagulase-negativeStaphylococcus sp., and Micrococcussp. | Sphinogomonassp. (a) and Staphylococcus sp. (b) (Staphylococcus aureus subgroup) |
28 | Proteus mirabilis, Staphylococcus aureus, coagulase-negativeStaphylococcus sp., Peptostreptococcussp., Bordetellasp., and Stenotrophomonas maltophilia | Proteus mirabilis and Bacteroidessp. | Sphinogomonassp. (a) and Peptoniphilus sp. (b) |
48 | Coagulase-negative Staphylococcus sp., Pseudomonas sp., Peptostreptococcussp., Eubacterium sp., and Aerococcussp. | Coagulase-negative Staphylococcus sp., Pseudomonas sp., Streptococcussp., and Proteus mirabilis | Pseudomonas sp. (a) (Pseudomonas aeruginosa subgroup) and Streptococcus dysgalactiae (b) |
49 | Coagulase-negative Staphylococcussp., gram-negative nonfermenter, and Aerococcussp. | Pseudomonassp. and Salmonellasp. | Corynebacterium striatum, unidentified β-proteobacteriumd, and-e (c) |
53 | Coagulase-negative Staphylococcus sp., Pseudomonas sp., Peptostreptococcus magnus, and Streptococcussp. | Coagulase-negative Staphylococcus sp., Pseudomonas sp., Peptostreptococcus magnus, and Staphylococcus aureus | - |
Underlined species in this column were isolated only from the swab and not from the biopsy.
Underlined species in this column were isolated only from the biopsy and not from the swab.
Underlined species in this column were identified only from PCR cloning-sequencing and not cultured from the wound, i.e., uncultured or unculturable. Where clones could not be identified to a single specific species, the closest related subgroup is given in parentheses. Designations (a), (b), (c), and (d) refer to the bands excised from the DGGE gel in Fig. 1.
The accession no. of the sequence showing closest identity is AF467355.
Identified as the Taq polymerase contaminant, Thermus sp.