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. 2004 Aug;42(8):3549–3557. doi: 10.1128/JCM.42.8.3549-3557.2004

TABLE 1.

Cultured bacterial isolates from swabs and biopsies from individual patients with healing chronic venous leg ulcers and DGGE analysis of the so-called unculturable population from the same wounds

Patient Wound surface (swab)a Wound bed (biopsy)b DGGE (PCR-cloning/sequencing)c
12 Coagulase-negative Staphylococcus sp. and Staphylococcus aureus Coagulase-negative Staphylococcus sp. Pseudomonassp. (a) (Pseudomonas putida subgroup) and Salmonellasp. (b)
19 Coagulase-negative Staphylococcus sp., Micrococcus sp. and Streptococcus sp. Coagulase-negative Staphylococcus sp. and Micrococcus sp. Stenotrophomonas maltophilia, (a) Paenibacillus sp., and Pseudomonassp. (b) (Pseudomonas putida subgroup)
24 Eubacteriumsp. Staphylococcus aureus, coagulase-negativeStaphylococcus sp., and Peptostreptococcussp. Staphylococcus sp. (a) (Staphylococcus aureus subgroup) and Pseudomonassp. (b) (Pseudomonas putida subgroup)
26 Pseudomonassp. and gram-negative nonfermenter Staphylococcus aureus, coagulase-negativeStaphylococcus sp., and Micrococcussp. Sphinogomonassp. (a) and Staphylococcus sp. (b) (Staphylococcus aureus subgroup)
28 Proteus mirabilis, Staphylococcus aureus, coagulase-negativeStaphylococcus sp., Peptostreptococcussp., Bordetellasp., and Stenotrophomonas maltophilia Proteus mirabilis and Bacteroidessp. Sphinogomonassp. (a) and Peptoniphilus sp. (b)
48 Coagulase-negative Staphylococcus sp., Pseudomonas sp., Peptostreptococcussp., Eubacterium sp., and Aerococcussp. Coagulase-negative Staphylococcus sp., Pseudomonas sp., Streptococcussp., and Proteus mirabilis Pseudomonas sp. (a) (Pseudomonas aeruginosa subgroup) and Streptococcus dysgalactiae (b)
49 Coagulase-negative Staphylococcussp., gram-negative nonfermenter, and Aerococcussp. Pseudomonassp. and Salmonellasp. Corynebacterium striatum, unidentified β-proteobacteriumd, and-e (c)
53 Coagulase-negative Staphylococcus sp., Pseudomonas sp., Peptostreptococcus magnus, and Streptococcussp. Coagulase-negative Staphylococcus sp., Pseudomonas sp., Peptostreptococcus magnus, and Staphylococcus aureus -
a

Underlined species in this column were isolated only from the swab and not from the biopsy.

b

Underlined species in this column were isolated only from the biopsy and not from the swab.

c

Underlined species in this column were identified only from PCR cloning-sequencing and not cultured from the wound, i.e., uncultured or unculturable. Where clones could not be identified to a single specific species, the closest related subgroup is given in parentheses. Designations (a), (b), (c), and (d) refer to the bands excised from the DGGE gel in Fig. 1.

d

The accession no. of the sequence showing closest identity is AF467355.

e

Identified as the Taq polymerase contaminant, Thermus sp.