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. 2016 Aug 8;6:31235. doi: 10.1038/srep31235

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Copyright © 2016, The Author(s)

This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/

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Long read alignments (grey) towards the male gadMor2 reference genome overlap those regions containing sex-associated genotypes (red box) on LG08 (a,b) and LG11 (c). Note the different genomic scale (in Kb) for each of the sub-panels. Small indels (black dots) within the alignments are a typical feature of PacBio read data. Read alignments are visualized using the Integrative Genomics Viewer.