Table 3. Names and genbank ID of sex-determining genes from various teleosts and genes known to be involved in sex-differentiation in Atlantic cod.
| Gene name | Genbank ID | Species | LG | Start | Stop | Alignment score |
|---|---|---|---|---|---|---|
| akap11 | XM_011473624.1 | Oryzias latipes | 20 | 10120287 | 10118045 | 1859 |
| amh | JN802292.1 | Gadus morhua | 12 | 24019786 | 24018572 | 1610 |
| amhy | HM153803.1 | Odontesthes hatcheri | 12 | 24019643 | 24018570 | 473 |
| amhr2 | NM_001280009.1 | Takifugu rubripes | 13 | 9249009 | 9250493 | 574 |
| ar | FJ268742.1 | Gadus morhua | 10 | 19432117 | 19442119 | 3743 |
| cyp19a | DQ402370.1 | Gadus morhua | 14 | 16165860 | 16169755 | 2851 |
| cyp19b | JN802291.1 | Gadus morhua | 9 | 2257039 | 2260649 | 2648 |
| dmrt | AJ506094.1 | Gadus morhua | 6 | 19949821 | 19940091 | 855 |
| dmrt2a | JN802284 | Gadus morhua | 6 | 19911488 | 19908495 | 1650 |
| dmrt3 | JN802285 | Gadus morhua | 6 | 19922948 | 19919278 | 2020 |
| dmrt4 | JN802286 | Gadus morhua | 17 | 14093750 | 14092035 | 2546 |
| dmrt5 | JN802287 | Gadus morhua | 12 | 20988494 | 20990196 | 2537 |
| dmy | NM_001104680.1 | Oryzias latipes | 6 | 19948867 | 19940028 | 382 |
| esr1 | JX178935.1 | Gadus morhua | 21 | 18435483 | 18415167 | 2611 |
| esr2a | JX178936.1 | Gadus morhua | 21 | 8193571 | 8213026 | 3711 |
| esr2b | JK993476.1 | Gadus morhua | 5 | 20297385 | 20297568 | 334 |
| foxl2 | NM_001104888.1 | Oryzias latipes | 1 | 27838167 | 27837834 | 470 |
| gsdf | KC204828.1 | Gadus morhua | 4 | 25085824 | 25083577 | 1040 |
| sdY | NM_001281416.1 | Oncorhynchus mykiss | 7 | 1898620 | 1898410 | 136 |
| sox3 | AB775143.1 | Oryzias dancena | 10 | 17937590 | 17936636 | 1482 |
| sox9a | JN802288.1 | Gadus morhua | 18 | 7659675 | 7661680 | 1722 |
| sox9b | JN802289.1 | Gadus morhua | 2 | 17478629 | 17480857 | 2714 |
| vasa | HM451456.1 | Gadus morhua | 7 | 3034506 | 3016733 | 3812 |
Location (in base pair) on the various linkage groups (LD) was determined by aligning the protein coding sequence to the genome assembly using exonerate 2.2.0 50 with the option –model coding2genome. Alignments with the highest score (–bestn) were selected as the most likely genomic location.