TABLE 1.
Name | Sequence | Location |
---|---|---|
P1 | 5′-GTT TGA TCC TGG CTC AG | 11-27 (16S rRNA) |
P10 | 5′-CCA GTC TTA TGG GCA GGT TAC | 136-116 (16S rRNA) |
P11 | 5′-TCC ATA AGT GAC AGC CGA AGC | 226-206 (16S rRNA) |
P5 | 5′-CTA CGG GAG GCA GCA GTG GG | 340-360 (16S rRNA) |
P3 | 5′-GWA TTA CCG CGG CKG CTG | 535-517 (16S rRNA) |
P2 | 5′-GGA TTA GAT ACC CTG GTA GT | 784-803 (16S rRNA) |
P6 | 5′-CCG TCA ATT CCT TTR AGT TT | 926-907 (16S rRNA) |
P8 | 5′-TTC GGG AGC AGA GTG ACA GGT | 1029-1049 (16S rRNA) |
P9 | 5′-TAC ACA CCG CCC GTC ACA CCA | 1392-1412 (16S rRNA) |
P4 | 5′-RGT GAG CTR TTA CGC | 1513-1492 (16S rRNA) |
Pr1 | 5′-CCG AAT GGG GVA ACC C | 114-129 (23S rRNA) |
Pr13 | 5′-CCG TTT CGC TCG CCG CTA CTC | 262-242 (23S rRNA) |
PB1 | 5′-TAG TGA TCG ATA GTG AAC CAG | 485-505 (23S rRNA) |
Pr2 | 5′-CAT TMT ACA AAA GGY ACG C | 621-603 (23S rRNA) |
Pr3 | 5′-GCG TRC CTT TTG TAK AAT G | 603-621 (23S rRNA) |
PB2 | 5′-TAG TGA TCG ATA GTG AAC CAG | 755-736 (23S rRNA) |
PB3 | 5′-TAG TGA TCG ATA GTG AAC CAG | 969-990 (23S rRNA) |
Pr4 | 5′-RGT GAG CTR TTA CGC | 1151-1137 (23S rRNA) |
Pr5 | 5′-WGC GTA AYA GCT CAC | 1136-1150 (23S rRNA) |
PB4 | 5′-CAT ACC GGC ATT CTC ACT TC | 1308-1289 (23S rRNA) |
PB5 | 5′-ACA GGC GTA GGC GAT GGA C | 1408-1426 (23S rRNA) |
PB8 | 5′-AAC CTT TGG GCG CCT CC | 1679-1661 (23S rRNA) |
Pr6 | 5′-CYA CCT GTG WCG GTT T | 1673-1659 (23S rRNA) |
Pr7 | 5′-AAA CCG WCA CAG GTR G | 1659-1673 (23S rRNA) |
Pr8 | 5′-CAY GGG GTC TTT RCG TC | 2092-2076 (23S rRNA) |
Pr9 | 5′-GAC GYA AAG ACC CCR TG | 2076-2092 (23S rRNA) |
Pr10 | 5′-GAG YCG ACA TCG AGG | 2535-2521 (23S rRNA) |
Pr11 | 5′-CCT CGA TGT CGR CTC | 2521-2535 (23S rRNA) |
Pr12 | 5′-GYT TAG ATG CYT TC | 2783-2770 (23S rRNA) |
R1 | 5′-GGC GGC GTC CTA CTC TCA C | 112-95 (5S rRNA) |
Primers P1 to P4, Pr1 to Pr7, and R1 were used for DNA amplification. All other primers were utilized for sequencing. Primers P8, P9, P10, and P11 were selected de novo; other primers were described earlier (for details, see reference 32).