Table 1.
Primer name* | Sequence | Target gene |
---|---|---|
[Genomic PCR] | ||
HPT-F1 | 5′-ATTCCGGAAGTGCTTGACAT-3′ | HPT (T-DNA) |
HPT-R3 | 5′-CAGTCCTCGGAAAGCATCAG-3′ | |
PDFR-F1 | 5′-TGGCGTTCCTTAAACAGCTT-3′ | TfDFR promoter |
PDFR-R2 | 5′-TGAACACCGTTGCTTTTTGA-3′ | |
35S-F1 | 5′-CGCACAATCCCACTATCCTT-3′ | 35 S promoter |
PhAN2-R1 | 5′-GGTCCATGCACCTTTCCTTA-3′ | PhAN2 |
PhPH4-R1 | 5′-TGATGATGATGGGGTTCTCA-3′ | PhPH4 |
InItNHX1-R1 | 5′-CCGAATTTTGGAGCAAAGAA-3′ | InNHX1, ItNHX1 |
InNHX2-R1 | 5′-AGTGTCCCAACGTCAACTCC-3′ | InNHX2 |
[Cloning] | ||
AN2-UP-F3 | 5′-CTTTCTTTGTCCTTTAGTTGTCAGTTGCAGTGAG-3′ | PhAN2 |
AN2-UP-R1 | 5′-AATTTCAAATGTCCAACGATTTCAACTGTAGTGTTT-3′ | |
PH4-UP-F1 | 5′-CTCCCCTCCCAAATTTAGTACTATGACTTTATC-3′ | PhPH4 |
PH4-UP-R3 | 5′-AACCCTCACATACATATATATATAGCTACAACATCA-3′ | |
InNHX1-UP-F1 | 5′-CCCCACATCTCACCTTTCAAGTGATTTGTATGTTTT-3′ | ItNHX1 |
InNHX1-UP-R1 | 5′-TGAGAAGACTTTCACCCAGCCCATTTCATAAGAG-3′ | |
[Subcloning] | ||
AN2-F1-SmaI | 5′-AATAATCCCGGGATGAGTACTTCTAATGCATCAACATCAGGA-3′ | PhAN2 |
AN2-R1-SmaI | 5′-AATAATCCCGGGACTAACTAAATCCCATATGTCATCAATATCAACTG-3′ | |
PhPH4-F1-SmaI | 5′-AATAATCCCGGGATGAGAACCCCATCATCATCATCAACAA-3′ | PhPH4 |
PhPH4-R1-SmaI | 5′-AATAATCCCGGGACTGGGATTATATTGATCAGATGAAGGTGTGGA-3′ | |
InNHX1-F1-SmaI | 5′-AATAATCCCGGGATGGCGTTCGGGTTGTCTTCTT-3′ | InNHX1 |
InNHX1-R1-SalI | 5′-AATAATGTCGACTCATCTAGGGCTCTGCTCAACTGG-3′ | |
InNHX2-F1-DraI | 5′-AATAATTTTAAAATGGGAGTTGACGTTGGGACAC-3′ | InNHX2 |
InNHX2-R1-SalI | 5′-AATAATGTCGACTCACTGCCATTGTGGTTCATTCTG-3′ | |
ItNHX1-F1-SmaI | 5′-AATAATCCCGGGATGGCGTTCGGATTGTCTTCTTT-3′ | ItNHX1 |
ItNHX1-R1-SalI | 5′-AATAATGTCGACTCATCTAGGGCTCTGCTCAGCTG-3′ | |
HSPt-F-SacI | 5′-AAAGAGCTCATATGAAGATGAAGATGAAA-3′ | HSP terminator |
HSPt-R-EcoRI | 5′-AAAGAATTCCTTATCTTTAATCATATTCC-3′ |
‘F’ represents forward primer and ‘R’ represents reverse primer.