Table 2. Pairwise comparisons between intra-genomic ITS1 and ITS2 variants cloned from each strain.
Numbers of transition (si) and transversion (sv), as well as the number of indels are computed in pairwise comparisons between copies 1 and 2 of ITS1 and ITS2 segments with MEGA6. The total number of nucleotides in indels is reported in brackets. Identity (%) indicates percentage of identical nucleotides between copies 1 and 2 of full-length ITS region or ITS1/ITS2 segments scored within each strain. Abbreviation: cp, copy.
| Strains | N°cp | cp1 vs cp2 identity (%) | ITS1 | ITS2 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Si | Sv | Indel (nt) | Identity (%) | Si | Sv | Indel (nt) | Identity (%) | |||
| NBRC 0495 | 2 | 94.21 | 0 | 0 | 0 | 100 | 17 | 21 | 6(66) | 85.3 |
| NBRC 10652 | 2 | 94.98 | 0 | 0 | 0 | 100 | 18 | 20 | 5(42) | 86.73 |
| NBRC 10669 | 2 | 94.48 | 20 | 24 | 6(35) | 81.37 | 3 | 1 | 2(14) | 98.20 |
| NBRC 10670 | 2 | 95.73 | 21 | 25 | 5(34) | 80.79 | 0 | 0 | 1(1) | 100 |
| NBRC 10672 | 2 | 95.15 | 0 | 0 | 0 | 100 | 14 | 20 | 5(40) | 87.32 |
| M21 | 2 | 91.00 | 19 | 19 | 7(32) | 83.08 | 14 | 10 | 7(57) | 89.04 |