Table 2.
Subset of nuclear localized proteins identified by LC-MS-MS in cerk1 plants following chitosan treatment.
| Protein description |
Uniprot ID |
AGI |
|---|---|---|
| Transcription factor or transcriptional regulator | ||
| MED16, Mediator of RNA polymerase II transcription subunit 16, positive regulation of SAR | F4JGZ1 | AT4G04920 |
| Small RNA degrading nuclease 3, regulation of transcription | F4K3N3 | AT5G67240 |
| ACT domain-containing small subunit of acetolactate synthase protein | Q93YZ7 | AT2G31810 |
| Trihelix transcription factor ASIL2, sequence-specific DNA binding transcription factors | Q9LJG8 | AT3G14180 |
| VERNALIZATION INDEPENDENCE 5, regulation of transcription, DNA binding | D7KW58 | AT1G61040 |
| Sequence-specific DNA binding transcription factors | Q8LF33 | AT3G11100 |
| Short life 1, PHD finger and BAH motif containing putative transcription factor | F4JV93 | AT4G39100 |
| Mediator of RNA polymerase II transcription subunit 32 | Q84VW5 | AT1G11760 |
| CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 2, CAMTA2 | Q6NPP4 | AT5G64220 |
| EARLY BOLTING IN SHORT DAYS, chromatin assembly or disassembly | O65462 | AT4G22140 |
| RNA-binding protein | ||
| NUCLEOSTEMIN-LIKE 1, nucleolar GTP- binding protein involved in RNA methylation | Q93Y17 | AT3G07050 |
| RPT2a encodes the 26S proteasome subunit, regulate gene silencing via DNA methylation | Q9SZD4 | AT4G29040 |
| EMBRYO DEFECTIVE 2770, RNA-directed DNA methylation, mRNA splicing | Q9ZT71 | AT4G03430 |
| Serine/arginine-rich SC35-like splicing factor | Q8L3X8 | AT3G55460 |
| RZ1B, Putative RNA-binding involved in cold tolerance | O22703 | AT1G60650 |
| WD-40 protein involved in histone deacetylation in response to abiotic stress | Q9FN19 | AT5G67320 |
| TOUGH, Interacts with TATA-box binding protein 2. RNA binding | Q8GXN9 | AT5G23080 |
| THO complex subunit 7B, component THO/TREX complex | Q9M8T6 | AT3G02950 |
| Small RNA degrading nuclease 3, regulation of transcription | F4K3N3 | AT5G67240 |
| RNA binding (RRM/RBD/RNP motifs), RNA processing | F4J9U9 | AT3G12640 |
| mRNA splicing factor, Cwf18 | Q9MAB2 | AT3G05070 |
| SWI/SNF complex subunit SWI3C, ATP-dependent chromatin-remodeling complex | Q9XI07 | AT1G21700 |
| Splicing factor U2af large subunit B, Necessary for the splicing of pre-mRNA | Q8L716 | AT1G60900 |
| Small nuclear ribonucleoprotein | Q9SUM2 | AT4G30220 |
| Small nuclear ribonucleoprotein family protein, mRNA splicing | Q9C6K5 | AT1G76860 |
| nuclear cap-binding protein, mRNA metabolism | Q9XFD1 | AT5G44200 |
| RNA-binding protein-related | F4JM55 | AT4G28990 |