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Specificity and runtime comparison using real tumors
| Caller | FP | Specificity (%) | Time (h) |
|---|---|---|---|
| SNVSniffer(M1) | 12387 | 99.9995 | 1.8 |
| SomaticSniper | 209530 | 99.9923 | 1.2 |
| VarScan2 | 4507 | 99.9998 | 2.9 |
| JSM2 | 38550 | 99.9986 | 5.0 |
| MuTect | 2463700 | 99.9096 | 8.7 |
Best results are highlighted in boldface
