Table 1. Functional GO categories of clusters in the T and S strains.

Cluster	Functional GO Category	Genes
Early in T strain (Cluster I)	Carbohydrate metabolic process	DOG1, YPI1
	Ion transport	AVT4, DAL5
	Mitochondrion organization	PPE1, UPS3
	Cellular respiration	COX5B
Early in T strain (Cluster I) repressed in S strain (Cluster IV)	Carbohydrate metabolic process	ALG6, DEP1, DOG1, TPS3, YPI1
	Mitochondrial organization	ATG33, COX20, PPE1, UPS3

Comparison of functional GO categories of differentially expressed genes in the T strain clusters with the S strain. See Table S2 for the full list of genes in each cluster.