Table 1. Key differences between three implementations of LDhot.

Method	Auton et al. 2012	Auton et al. 2014	mlehot
Window size	200 kb	100 kb	20 kb
P-value cutoff	0.01	0.001	0.01
Max. size	5 kb	None	None
LDhat	Peak must be ≥5/kb	–	Intersection with 1 kb regions with ρ ≥ 5
Simulations	Region-specific	Region-specific	Lookup table