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. 2016 May 27;6(8):2285–2298. doi: 10.1534/g3.116.029678

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Copyright © 2016 Pilot et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Outlier SNPs inferred in BayeScan analysis comparing FBDs and (A) East Asian breeds or (B) European breeds. The vertical axis represents values of locus-specific F_ST coefficient, and the horizontal axis indicates the logarithm of q-values. The vertical line corresponds to a threshold q-value assumed in each analysis. Dots correspond to SNPs, and red dots correspond to shared candidate SNPs between the two analyses that are placed within genes or in close proximity of genes, with names of these genes being given. PKD1L1-1: BICF2G630842219, PKD1L1-2: BICF2G630842234, and PKD1L1-3: BICF2S23454833. The MKKS gene is also known as BBS6. FBDs, free-breeding dogs; SNPs, single nucleotide polymorphisms.