Table 2. Shared outlier SNPs inferred in two BayeScan analyses comparing East Asian (EA) dog breeds with FBDs or modern European (ME) breeds.

SNP ID	Chr	SNP Position CanFam2	SNP Position CanFam3.1	Substitution Type	Location Relative to Closest Gene	Gene Symbol	BayeScan EA vs. FBD			BayeScan EA vs. ME			Gene Function
							q-Value	α	FST	q-Value	α	FST
BICF2G630560144; rs24457899	7	58,926,419	55,945,622	A/G	Intron	NOL4	0.040	1.456	0.222	0.076	1.359	0.279	Encodes nucleolar protein 4 expressed in fetal brain, adult brain, and testis
BICF2P1348247; rs8579426	18	17,773,402	14,783,296	A/C	Intron	ATXN7L1	0.124	1.274	0.204	0.059	1.602	0.317	Associated with spinocerebellar ataxia type 7 in humans
BICF2G630509420; rs23187455	24	14,905,265	11,907,423	C/T	Intron	MKKS (BBS6)	0.016	1.841	0.265	0.145	1.272	0.272	Associated with McKusick–Kaufman syndrome and Bardet–Biedl syndrome type 6 in humans; secondary symptoms include genital abnormalities and dental crowding
BICF2G630662694	13	35,179,641	32,140,606	A/G	257,806 3′-downstream	GAPDHS Homolog	0.022	1.801	0.260	0.093	1.451	0.296	Glyceraldehyde-3-phosphate dehydrogenase, spermatogenic; specifically expressed in spermatogenetic cells

SNP, single nucleotide polymorphism; Chr, chromosome, EA, East Asian; FBD, free-breeding dogs; ME, modern European.