Table 1. GO annotation.

GO Class Description	# Genes in Genome	# Hits	Genesa
Germ plasm	58	7	mex-3, car-1, puf-5, pgl-2, pie-1, csr-1, ife-1, cacn-1
Pole plasm	58	7
P granule	58	7
Cytoplasmic ribonucleoprotein granule	64	7
Ribonucleoprotein granule	65	7
Ribonucleoprotein complex	78	8
Cell cortex	75	6	rga-3, srgp-1, kin-18, wsp-1, cav-1, sao-1
Nuclear chromosome	62	6	ekl-1, csr-1, set-25, zhp-3, ceh-39, klp-19
Condensed nuclear chromosome	40	5
Meiotic chromosome segregation	137	14	tbg-1, zen-4, cyp-31A3, cav-1, srgp-1, kca-1, klp-19, ooc-3, car-1, zhp-3, arp-6, fbxa-10, hpo-9, rad-50, him-10, set-2, coh-3, eri-1, dcr-1, atl-1, scc-1, spo-11, atx-2, cpg-2, mpk-1, cki-2, C18H2.2
Nuclear chromosome segregation	156	15
Chromosome segregation	169	15
Meiotic nuclear division	212	20
Meiotic cell cycle process	218	20
Meiotic cell cycle	219	20
Regulation of cell cycle	190	12
Cell cycle	425	28
Cell cycle process	420	28
Nuclear division	269	24
Organelle fission	270	24
RNA interference	136	12	ekl-1, ceh-39, eri-1, dcr-1, sams-3, rpn-10, cpsf-2, cin-4, pro-2, tftc-5, mex-3, pie-1, phf-30, sti-1, CO4F12.1, W06E11.1
Gene silencing by RNA	141	12
Post-transcriptional gene silencing by RNA	141	12
Gene silencing	141	12
Post-transcriptional gene silencing	141	12
Post-transcriptional regulation of gene expression	161	13
Regulation of gene expression, epigenetic	160	12
Negative regulation of gene expression	209	15
Negative regulation of macromolecule Metabolic process	235	15
Negative regulation of metabolic process	239	16
Hermaphrodite sex determination	48	7	rpn-10, ceh-39, atx-2, cacn-1, fem-3, ddx-23, rnp-4, C07A9.2
Sex determination	60	8

GO, Gene Ontology; #, number.

^aGenes listed for each set of related GO classes.