Table 1.

Characteristics and sequence accession numbers for dairy-associated B. cereus group isolates sequenced in this study

Isolate	Source	BioSample ID	SRA Run	GenBank accession number	PubMLST ID	rpoB allelic type (AT)	MLST STa	Novel MLST AT or STb
FSL H7-0926	Pasteurized 2 % milk	SAMN03800014	SRR2541537	LOBD00000000	1774	90	667
FSL H8-0482	Soil from areas adjacent to barns	SAMN03800015	SRR2541601	LOAZ00000000	1764	129	223
FSL H8-0488	Water from hose in milking area	SAMN03800016	SRR2541602	LOBA00000000	1765	129	111
FSL K6-0040	Raw milk	SAMN03800017	SRR2541603	LOBE00000000	1775	362	1101	ilv 245, ST-1101
FSL K6-0043	Raw milk	SAMN03800018	SRR2541604	LOMW00000000	1763	363	1087	pta 235, ST-1087
FSL K6-0067	Raw milk	SAMN03800019	SRR2541605	LOMN00000000	1762	365	1086	gmk 138, pur 218, ST-1086
FSL K6-0069	Raw milk	SAMN03800020	SRR2541606	LOBB00000000	1756	194	1080	glp 224, gmk 135, ilv 237, pta 233, ST-1080
FSL K6-0073	Raw milk	SAMN03800021	SRR2541607	LOMO00000000	1773	366	33
FSL K6-0267	Raw milk	SAMN03800022	SRR2541613	LOMP00000000	1755	90	1090	ST-1090
FSL M8-0117	Raw milk	SAMN03800023	SRR2541639	LONG00000000	1761	308	1085	gmk 137, pyc 186, ST-1085
FSL W8-0003	Ricotta/mozzarella whey	SAMN03800024	SRR2541640	LOMQ00000000	1760	125	1084	ilv 239, ST-1084
FSL W8-0050	Condensed product from evaporator	SAMN03800025	SRR2541641	LOMR00000000	1772	380	32
FSL W8-0169	Raw milk	SAMN03800026	SRR2541651	LOBC00000000	1757	61	1081	gmk 136, pta 234, ST-1081
FSL W8-0268	Evaporator - liquid	SAMN03800027	SRR2541662	LOMS00000000	1759	92	1083	tpi 185, ST-1083
FSL W8-0275	Liquid milk whey permeate	SAMN03800028	SRR2541668	LOMT00000000	1771	463	1050
FSL W8-0483	Liquid raw milk from silo	SAMN03800029	SRR2541674	LOMU00000000	1758	120	1082	ilv 238, ST-1082
FSL W8-0520	Processed liquid milk	SAMN03800030	SRR2541680	LONH00000000	1770	481	1032
FSL W8-0523	Liquid from blended whey silo	SAMN03800031	SRR2541686	LOMV00000000	1769	481	1032
FSL W8-0640	Processed skim milk	SAMN03800032	SRR2541688	LOQA00000000	1754	154	1089	ST-1089
FSL W8-0824	Finished dairy product	SAMN03800033	SRR2541693	LOQB00000000	1767	92	24
FSL W8-0932	Processed skim milk	SAMN03800034	SRR2541715	LOQC00000000	1766	120	365
FSL W8-0767	Milk powder	SAMN03800035	SRR2541718	LOQD00000000	1768	154	787

^aST sequence type, MLST STs were assigned to be consistent with the B. cereus PubMLST database [35]

^bAT allelic type; this column indicates new allelic types for MLST genes (e.g., ilv 245; gene names can be found on PubMLST database website [35]) and newly assigned STs (e.g., ST-1087)