Table 1.
FNIII domain constructs used in this work as shown in Fig. 3A and the results of their bacterial expression. Note that for constructs that did not express as soluble protein the protein yield refers to soluble protein obtained after Nvoy assisted refolding. Column headings: D: Domain; Start/End: position of first and last residue in full length human polycystin 1; Size: number of amino acids of polycystin 1 in the construct; MW: molecular weight in kD; ε: molar extinction coefficient in M−1 cm−1; Host: bacterial expression host ArcticExpress (AE) or BL21* (Star); Soluble: is the protein expressed soluble?; Yield: amount of purified, soluble protein in mg from 1L LB culture; Solubility: rough qualitative estimate of protein solubility after purification.
D | Start | End | Size | MW | ε | Host | Soluble | Yield | Solubility | Comments |
---|---|---|---|---|---|---|---|---|---|---|
D1 | 2152 | 2262 | 111 | 12.6 | 12950 | Star | NO | 50 | Modest | - |
D1 | 2152 | 2262 | 111 | 12.6 | 12950 | AE | YES | 1 | Modest | soluble aggregates |
D1 | 2155 | 2254 | 100 | 11.4 | 12950 | Star | NO | 15 | Poor | - |
D1 | 2155 | 2254 | 100 | 11.4 | 12950 | AE | NO | - | - | - |
D2 | 2257 | 2369 | 113 | 12.3 | 20970 | Star | NO | 50 | Good | - |
D2 | 2257 | 2369 | 113 | 12.3 | 20970 | AE | YES | 2 | Good | - |
D2 | 2257 | 2374 | 118 | 12.9 | 20970 | Star | NO | 45 | Modest | - |
D2 | 2257 | 2374 | 118 | 12.9 | 20970 | AE | YES | 1 | Modest | precipitated after short time |
D2 | 2282 | 2361 | 80 | 8.8 | 13980 | Star | NO | ~2 | Very poor | - |
D2 | 2282 | 2361 | 80 | 8.8 | 13980 | AE | NO | - | - | - |
D3 | 2371 | 2474 | 104 | 11.2 | 11460 | Star | NO | 20 | Modest | degradation |
D3 | 2374 | 2474 | 101 | 10.9 | 11460 | Star | NO | 30 | Modest | degradation |
D3 | 2374 | 2474 | 101 | 10.9 | 11460 | AE | NO | - | - | - |
D3 | 2392 | 2463 | 76 | 8.2 | 6990 | Star | NO | 10 | Poor | degradation |
D4 | 2468 | 2577 | 110 | 11.8 | 9970 | Star | NO | - | - | Very poor expression |
D4 | 2477 | 2577 | 101 | 10.9 | 9970 | Star | NO | - | - | Very poor expression |
D4 | 2477 | 2577 | 101 | 10.9 | 9970 | AE | NO | - | - | Very poor expression |
D4 | 2485 | 2573 | 93 | 10 | 9970 | Star | NO | - | - | Very poor expression |