Table 3. Statistical values and absolute abundance of the 22 operational taxonomic units (OTUs) with significant differential abundance between Staphylococcus aureus carriers and non-carriers.
The degree of differential abundance is represented by log2 fold change (logFC) which indicates a positive or negative interaction (logFC >0 or <0) of the specified OTU with S. aureus carriage.
| OTU | Abundance | logFC | p-Value | Adjusted p-Value |
|---|---|---|---|---|
| Acinetobacter lwoffii | 932 | -2.22 | 5.02e-04 | 1.06e-02 |
| Acinetobacter soli | 61 | -2.84 | 3.67e-03 | 4.06e-02 |
| Anaerococcus lactolyticus | 71 | -3.22 | 5.53e-04 | 1.07e-02 |
| Facklamia tabacinasalis | 1356 | -1.78 | 2.52e-03 | 3.25e-02 |
| Kurthia gibsonii | 15752 | -3.49 | 1.88e-08 | 2.19e-06 |
| Leuconostoc mesenteroides | 1657 | -1.98 | 3.30e-03 | 4.03e-02 |
| Leuconostoc pseudomesenteroides | 1004 | -2.38 | 2.45e-03 | 3.25e-02 |
| Moraxella boevrei | 865 | -2.62 | 1.17e-04 | 4.54e-03 |
| Unclassified Acinetobacter | 28127 | -1.63 | 2.48e-03 | 3.25e-02 |
| Unclassified Aerococcaceae | 96 | -1.90 | 3.60e-03 | 4.06e-02 |
| Unclassified Anaerococcus | 687 | -3.33 | 1.03e-08 | 2.19e-06 |
| Unclassified Chitinophagaceae | 48 | -2.84 | 4.43e-03 | 4.67e-02 |
| Unclassified Facklamia | 1204 | -1.47 | 4.82e-04 | 1.06e-02 |
| Unclassified Faecalibacterium | 655 | -1.09 | 1.07e-03 | 1.92e-02 |
| Unclassified Helcococcus | 827 | -2.73 | 2.45e-06 | 1.89e-04 |
| Unclassified Lachnospiraceae a | 1006 | -1.21 | 3.11e-04 | 1.03e-02 |
| Unclassified Oscillibacter | 2458 | -1.30 | 3.70e-04 | 1.06e-02 |
| Unclassified Prevotella | 1959 | -1.60 | 4.37e-04 | 1.06e-02 |
| Unclassified Roseburia | 134 | -3.09 | 8.49e-06 | 4.93e-04 |
| Unclassified Vagococcus | 2552 | 1.56 | 1.24e-03 | 2.05e-02 |
| Unclassified Wautersiella | 106131 | 2.49 | 3.17e-05 | 1.47e-03 |
| Vagococcus fluvialis | 11099 | 1.54 | 2.40e-03 | 3.25e-02 |
a OTU with significant higher abundance in pigs with the non-carrier (AA) genotype.